XLOC_003579


Basic Information

Item Value
gene id XLOC_003579
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 33844208 ~ 33850289 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008642
TTTATGTACATCGCCAAAGGACAGTGAGACGTTGTGAAGGCTCCACATTCTCTTTAGCTTCAGAAGTcatttaaatgaacttttaaaaatCTTCCCTTTTAGTCTTTAAACATCTGGAGACGACTTAAGCCGAGATCAAAGCCAGCGAGCAGCAAATCCTCAAACGCTCTGTTCATCAAACCATGAGATTACACAGACTCGCACCGACATTATATGTACACTTTTCACTTCAGAGTCTGAGTACACGATCAGACCTTCGCAAATGAAACGCATCATCCTGCATATGACAATGTTTCCTTTTTTCACCATTCACAGAGGTTAAACTGGCTGATCCGTAATGAGATTCACCGGAGGAATACTGAGGCTTTTAAGACAATTTTGTAACAAACGCAGAGCAGATTTGACTTTGTTTGTCTGAAGCACAGTTTGTCTTTGTTCACAGCATCTGGGAGAGGATTTCTAAAGTTGTGAAGCCACAAATCTGCTGACACTCTTTGTAGTCAATGAGAGAAAACACAAGGGAGCATTCTGGAAACTCAaatctcatctttttttttttaataaccaaaacaaaatacaaaagaacTGAGGACACAGTGGAGCACATTATGGCTTCAACATCAATCTTAGTTACTGACACCAtttctgtaaaacaaaaacacgCTGGCATGAAAAGGAGAGCGTCACAAACAACTGCAATACAAGatgattattattttcattttttctgttATTGAATCCCTGGTTATTGTGGTTTGTTACGTTTTTTTCCGGGATTTTTGAAAACTTAACACTGATGACATCACACAAGTGTCACTGAGAAAGGGTCACAGTGGAAACTGTAGACGTGTTTGGCTTTGTTCAagttaactacactgtaaaaaaaaaaaaaaaaaaaaaaagtttttccagCAGCTGgtgtgccagaaaaaaaaaacaaaaaacaaaattacggctgttaaattacaacaatttaaagtaaaataacagccattaaattacagaaatttactgtaaaataacggagttacattacagaaatttaccataaaataacagccgttaaatgacagaaatgtactgtaaaatgacTGCcgttacattacagaaatttaccattaaaaaaaaacagatgttaaatgacagaaatgtacattacagaaatttaccgtaaaataacaccCGTTAAATGAGAGAACTTGCCCTGAAATAAcggccattacaaaaatttacagCAAAATAATTACCGTTAAATGACAAAAATTCACAGGAATTTTAAATTTAAGGAAGTTTGTGtgatttaatgtccattattgtacagtaaatttctgtaatttaatgctttttttgcttaaaaaaaaaacaacaaaaaaaagtaaaataacagatttttctaCAGTGTGACACTAATCAGCCTTCAGAGAATCAACAtagattagttcacccaaaaatgaaataaattacagTGTCTTCACATTGTCAAAATTTTGTTCGCAAAAGAAGTCTATCATCAAAGGCGTAGAAATGTATAAAGtgttgctgtgtaaaacatgtgctggataagttgccggttcattccgctgtggcgaccccagattaataaagggactaagccaaaaacaaaatgaataaaagaatttcAGCGTCTTTTTTGATATAGTTTGTAAAACGATTAATACATTTCTTCtttcttgggtgaactattcctctTACCAACTGtggttgcactttattttagGGTAGGTGTACTAACAGTGTACTCAAGTAAGAAGGTACTGAGTTATACAAGTTAACAATATAAGGTAAGGTTAGATTAAGGGTTAAAGAGattaaagttcacccaaaaattatgctttttttttttttttaggtttaatGGATTTCTTTTTTAGTTGAACACATAAAAcaaagatatttggaagaatgttggttgctggcacccatcaacttccatagaagaaaaaaaaatgactatggaagtcaatgcatgccacctaccagcattcttcaaaatatcctattttgtgtttaataggagacaaataataaatgaataaaataagaaatgaatacatttttgggGTGAGCTATTTCTTGTGAAACAGAACTGTAAGATAAAGTGCAACCTCAACCTCCCTAAAGAAGGACAGGTCATGTATGTTTGGAAAGAGTGATTCCTCATCTGACCTTTCTTCCATTTATCCCATCCTTTATGAACAGGACGAGCAAACTACAAGACAGAGAGGCTGTAACAATGAAACGGCACCTCACATACCTCCACAAACCCAAAGCAGGCTATATGCTATCCCACTGAGGTGTATGGAGTGTCACTGTGGTAGTTGTAGTCTGGACAGACCTTCTGTACCAGCTTATAGTCTGCACTGAAGAAGTCAATGTAGATGCAGATCACCTTGAAGGGCTTGGAGCACAGCCAGGACACATGACTTTGGGTTTGCTCCTGAAAGCAAACCCTGTTAGGGAAGTCGCTGCAAACGGACGTCCTCTTGCTTCGGTCCGTCTTCTCGTATTCCACTCGACAGTTGAACGCCTTACTGTCTTTGGGCACCTCGATGGTCTCCTGTTGAGTGATCTCAAAATCGACAGCCTTGGAAGGAGGGACCAGACTAACAGACACGTTCCCTAGACCGGTGGAATTGTGACGGAAATAGACACTGAAGGTCCCGTTGCCGTGGTCGACAATTTTCCCAGTAATGAGAAGGTTGAGCTTGACGGTTTTGATGTTGGAATGGAAGTCGCCCCAGCCGAACATCTTCTTAAACTTGCCGGTTTTCACATAGGGACGACGTTTGGCCCTCGAGAGGGTTCCCTCGCTATCGGTGTGGTTGGATAACCAAGCCCACAGATCCAGTGCCCCAGGGTCCGGAGCTGTTTCATGGTTTGGGCTGTTAGATTGGGACGTGTGGGAGAAAAGCCGCAGGGATTTGAGAATCTCAGAACGAGAGGCATTACAACATCTAgagttctccagcctccagcacctagactgctgctctgcacaagaagtttggccagaggggAAATGGTCATGCCCCTCTGAGCCTggattctctcaagTGGCTCCGATTGGCTATACCCTAACGTCACCACACGGTCTCCAATCCAGCTGCTGCCATCGTGGCGTAGGCTAAAAGTGGTGACAGGATGCTACTCGCGAGGCCCCGGGACACTTGAAtttctgtgttgtgttgtgtgtcagTGAAAT

Function

GO:

id name namespace
GO:0030099 myeloid cell differentiation biological_process
GO:0048731 system development biological_process
GO:0002520 immune system development biological_process
GO:0002262 myeloid cell homeostasis biological_process
GO:0000028 ribosomal small subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0043009 chordate embryonic development biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0048534 hematopoietic or lymphoid organ development biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0048856 anatomical structure development biological_process
GO:0010467 gene expression biological_process
GO:0048872 homeostasis of number of cells biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0061028 establishment of endothelial barrier biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034101 erythrocyte homeostasis biological_process
GO:0032501 multicellular organismal process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0032502 developmental process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008642 True 3223 lncRNA 0.39 4 33844208 33850289

Neighbor

gene id symbol gene type direction distance location
XLOC_003578 spoplb coding upstream 1493 33818179 ~ 33842715 (+)
XLOC_003577 thsd7bb coding upstream 71336 33628104 ~ 33772872 (+)
XLOC_003575 NA coding upstream 286115 33312576 ~ 33558093 (+)
XLOC_003576 BX119916.1 coding upstream 415216 33428874 ~ 33428992 (+)
XLOC_003574 nkpd1 coding upstream 552310 33284837 ~ 33291898 (+)
XLOC_003580 fam43a coding downstream 385067 34235356 ~ 34237802 (+)
XLOC_003581 NA coding downstream 547278 34397567 ~ 34402807 (+)
XLOC_003582 zmat3 coding downstream 672265 34522554 ~ 34537304 (+)
XLOC_003583 NA coding downstream 700735 34551024 ~ 34560739 (+)
XLOC_003584 si:dkey-202e22.2 coding downstream 910339 34760628 ~ 34779622 (+)
XLOC_003369 CR854846.2 misc upstream 17721126 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 21132212 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 21149945 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 21158609 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 21164180 12679732 ~ 12680028 (+)
XLOC_003573 NA non-coding upstream 619463 33218729 ~ 33224745 (+)
XLOC_003572 BX530032.1 non-coding upstream 668527 33172336 ~ 33175681 (+)
XLOC_003571 NA non-coding upstream 1084040 32751641 ~ 32760168 (+)
XLOC_003588 CT963136.1 non-coding downstream 1243316 35093605 ~ 35093722 (+)
XLOC_003590 NA non-coding downstream 1339434 35189723 ~ 35194538 (+)
XLOC_003592 NA non-coding downstream 1448554 35298843 ~ 35315234 (+)

Expression


Co-expression Network