RNA id: TCONS_00008642


Basic Information

Item Value
RNA id TCONS_00008642
length 3223
lncRNA type antisense_over
GC content 0.39
exon number 4
gene id XLOC_003579
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 33844208 ~ 33850289 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTATGTACATCGCCAAAGGACAGTGAGACGTTGTGAAGGCTCCACATTCTCTTTAGCTTCAGAAGTcatttaaatgaacttttaaaaatCTTCCCTTTTAGTCTTTAAACATCTGGAGACGACTTAAGCCGAGATCAAAGCCAGCGAGCAGCAAATCCTCAAACGCTCTGTTCATCAAACCATGAGATTACACAGACTCGCACCGACATTATATGTACACTTTTCACTTCAGAGTCTGAGTACACGATCAGACCTTCGCAAATGAAACGCATCATCCTGCATATGACAATGTTTCCTTTTTTCACCATTCACAGAGGTTAAACTGGCTGATCCGTAATGAGATTCACCGGAGGAATACTGAGGCTTTTAAGACAATTTTGTAACAAACGCAGAGCAGATTTGACTTTGTTTGTCTGAAGCACAGTTTGTCTTTGTTCACAGCATCTGGGAGAGGATTTCTAAAGTTGTGAAGCCACAAATCTGCTGACACTCTTTGTAGTCAATGAGAGAAAACACAAGGGAGCATTCTGGAAACTCAaatctcatctttttttttttaataaccaaaacaaaatacaaaagaacTGAGGACACAGTGGAGCACATTATGGCTTCAACATCAATCTTAGTTACTGACACCAtttctgtaaaacaaaaacacgCTGGCATGAAAAGGAGAGCGTCACAAACAACTGCAATACAAGatgattattattttcattttttctgttATTGAATCCCTGGTTATTGTGGTTTGTTACGTTTTTTTCCGGGATTTTTGAAAACTTAACACTGATGACATCACACAAGTGTCACTGAGAAAGGGTCACAGTGGAAACTGTAGACGTGTTTGGCTTTGTTCAagttaactacactgtaaaaaaaaaaaaaaaaaaaaaaagtttttccagCAGCTGgtgtgccagaaaaaaaaaacaaaaaacaaaattacggctgttaaattacaacaatttaaagtaaaataacagccattaaattacagaaatttactgtaaaataacggagttacattacagaaatttaccataaaataacagccgttaaatgacagaaatgtactgtaaaatgacTGCcgttacattacagaaatttaccattaaaaaaaaacagatgttaaatgacagaaatgtacattacagaaatttaccgtaaaataacaccCGTTAAATGAGAGAACTTGCCCTGAAATAAcggccattacaaaaatttacagCAAAATAATTACCGTTAAATGACAAAAATTCACAGGAATTTTAAATTTAAGGAAGTTTGTGtgatttaatgtccattattgtacagtaaatttctgtaatttaatgctttttttgcttaaaaaaaaaacaacaaaaaaaagtaaaataacagatttttctaCAGTGTGACACTAATCAGCCTTCAGAGAATCAACAtagattagttcacccaaaaatgaaataaattacagTGTCTTCACATTGTCAAAATTTTGTTCGCAAAAGAAGTCTATCATCAAAGGCGTAGAAATGTATAAAGtgttgctgtgtaaaacatgtgctggataagttgccggttcattccgctgtggcgaccccagattaataaagggactaagccaaaaacaaaatgaataaaagaatttcAGCGTCTTTTTTGATATAGTTTGTAAAACGATTAATACATTTCTTCtttcttgggtgaactattcctctTACCAACTGtggttgcactttattttagGGTAGGTGTACTAACAGTGTACTCAAGTAAGAAGGTACTGAGTTATACAAGTTAACAATATAAGGTAAGGTTAGATTAAGGGTTAAAGAGattaaagttcacccaaaaattatgctttttttttttttttaggtttaatGGATTTCTTTTTTAGTTGAACACATAAAAcaaagatatttggaagaatgttggttgctggcacccatcaacttccatagaagaaaaaaaaatgactatggaagtcaatgcatgccacctaccagcattcttcaaaatatcctattttgtgtttaataggagacaaataataaatgaataaaataagaaatgaatacatttttgggGTGAGCTATTTCTTGTGAAACAGAACTGTAAGATAAAGTGCAACCTCAACCTCCCTAAAGAAGGACAGGTCATGTATGTTTGGAAAGAGTGATTCCTCATCTGACCTTTCTTCCATTTATCCCATCCTTTATGAACAGGACGAGCAAACTACAAGACAGAGAGGCTGTAACAATGAAACGGCACCTCACATACCTCCACAAACCCAAAGCAGGCTATATGCTATCCCACTGAGGTGTATGGAGTGTCACTGTGGTAGTTGTAGTCTGGACAGACCTTCTGTACCAGCTTATAGTCTGCACTGAAGAAGTCAATGTAGATGCAGATCACCTTGAAGGGCTTGGAGCACAGCCAGGACACATGACTTTGGGTTTGCTCCTGAAAGCAAACCCTGTTAGGGAAGTCGCTGCAAACGGACGTCCTCTTGCTTCGGTCCGTCTTCTCGTATTCCACTCGACAGTTGAACGCCTTACTGTCTTTGGGCACCTCGATGGTCTCCTGTTGAGTGATCTCAAAATCGACAGCCTTGGAAGGAGGGACCAGACTAACAGACACGTTCCCTAGACCGGTGGAATTGTGACGGAAATAGACACTGAAGGTCCCGTTGCCGTGGTCGACAATTTTCCCAGTAATGAGAAGGTTGAGCTTGACGGTTTTGATGTTGGAATGGAAGTCGCCCCAGCCGAACATCTTCTTAAACTTGCCGGTTTTCACATAGGGACGACGTTTGGCCCTCGAGAGGGTTCCCTCGCTATCGGTGTGGTTGGATAACCAAGCCCACAGATCCAGTGCCCCAGGGTCCGGAGCTGTTTCATGGTTTGGGCTGTTAGATTGGGACGTGTGGGAGAAAAGCCGCAGGGATTTGAGAATCTCAGAACGAGAGGCATTACAACATCTAgagttctccagcctccagcacctagactgctgctctgcacaagaagtttggccagaggggAAATGGTCATGCCCCTCTGAGCCTggattctctcaagTGGCTCCGATTGGCTATACCCTAACGTCACCACACGGTCTCCAATCCAGCTGCTGCCATCGTGGCGTAGGCTAAAAGTGGTGACAGGATGCTACTCGCGAGGCCCCGGGACACTTGAAtttctgtgttgtgttgtgtgtcagTGAAAT

Function

GO:

id name namespace
GO:0030099 myeloid cell differentiation biological_process
GO:0048731 system development biological_process
GO:0002520 immune system development biological_process
GO:0002262 myeloid cell homeostasis biological_process
GO:0000028 ribosomal small subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0043009 chordate embryonic development biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0048534 hematopoietic or lymphoid organ development biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0048856 anatomical structure development biological_process
GO:0010467 gene expression biological_process
GO:0048872 homeostasis of number of cells biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0061028 establishment of endothelial barrier biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034101 erythrocyte homeostasis biological_process
GO:0032501 multicellular organismal process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0032502 developmental process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008641 lncRNA upstream 501964 33312576 ~ 33342244 (+) False XLOC_003575
TCONS_00008410 lncRNA upstream 514450 33312693 ~ 33329758 (+) False XLOC_003575
TCONS_00008640 lncRNA upstream 619463 33218729 ~ 33224745 (+) True XLOC_003573
TCONS_00006986 lncRNA upstream 668527 33172345 ~ 33175681 (+) True XLOC_003572
TCONS_00006984 lncRNA upstream 668890 33172336 ~ 33175318 (+) False XLOC_003572
TCONS_00008645 lncRNA downstream 547278 34397567 ~ 34402807 (+) False XLOC_003581
TCONS_00008646 lncRNA downstream 547278 34397567 ~ 34402807 (+) False XLOC_003581
TCONS_00008644 lncRNA downstream 547278 34397567 ~ 34402807 (+) False XLOC_003581
TCONS_00008643 lncRNA downstream 547278 34397567 ~ 34402807 (+) True XLOC_003581
TCONS_00008647 lncRNA downstream 700735 34551024 ~ 34560739 (+) False XLOC_003583
TCONS_00006994 mRNA upstream 1493 33818179 ~ 33842715 (+) False XLOC_003578
TCONS_00006993 mRNA upstream 71336 33628104 ~ 33772872 (+) True XLOC_003577
TCONS_00006989 mRNA upstream 286115 33312601 ~ 33558093 (+) False XLOC_003575
TCONS_00006990 mRNA upstream 286115 33426254 ~ 33558093 (+) False XLOC_003575
TCONS_00006991 mRNA upstream 289417 33426510 ~ 33554791 (+) True XLOC_003575
TCONS_00006997 mRNA downstream 385083 34235372 ~ 34237802 (+) True XLOC_003580
TCONS_00006998 mRNA downstream 672265 34522554 ~ 34537304 (+) False XLOC_003582
TCONS_00006999 mRNA downstream 672843 34523132 ~ 34537126 (+) True XLOC_003582
TCONS_00007000 mRNA downstream 910339 34760628 ~ 34779622 (+) True XLOC_003584
TCONS_00007001 mRNA downstream 973810 34824099 ~ 34914857 (+) False XLOC_003585
TCONS_00006995 other upstream 17097 33818189 ~ 33827111 (+) True XLOC_003578
TCONS_00006992 other upstream 415216 33428874 ~ 33428992 (+) True XLOC_003576
TCONS_00006982 other upstream 1247620 32596473 ~ 32596588 (+) True XLOC_003570
TCONS_00006976 other upstream 1652337 32191757 ~ 32191871 (+) True XLOC_003566
TCONS_00006975 other upstream 1858164 31985928 ~ 31986044 (+) True XLOC_003565
TCONS_00006996 other downstream 385067 34235356 ~ 34237091 (+) False XLOC_003580
TCONS_00007005 other downstream 1198353 35048642 ~ 35055532 (+) False XLOC_003587
TCONS_00007007 other downstream 1243316 35093605 ~ 35093722 (+) True XLOC_003588
TCONS_00007020 other downstream 2505074 36355363 ~ 36369192 (+) True XLOC_003598
TCONS_00007022 other downstream 2529059 36379348 ~ 36385824 (+) True XLOC_003599

Expression Profile

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