RNA id: TCONS_00006993


Basic Information

Item Value
RNA id TCONS_00006993
length 5651
RNA type mRNA
GC content 0.53
exon number 28
gene id XLOC_003577
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 33628104 ~ 33772872 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctGCCAGTGTCcgtacaccacacacacacaatcccagCTCTCCGTCTCTCTGCCACTTTATCTTCAGCAAGGGCTGCCCACTGGGATAATATTCTCTATCTGTCTTTCACGCGCATTAATcagtcattctctctctctctcttttactccTCCTCATTATTTGACACTTTTTCTCCATCCTCCTTTCTGCCATCCTCTTTCTTCACCTCCCTGTCCTCCTCCTTTATCACTTCCATTCTGCCGCTCTCTTCTTCTCACCGGCTGGAGAACTCACAGGAAGCTGGACCACAGACTGGTTTGATTCCAACAGGCTGACCAAAGATGGCATTTCTGAAAGAGGAGATTACCTTTGTCTTCTCCCTGTGGGCTTCCCTCCTTTATGTAGCACTAATGTCTCTTTCCCTGGGAGCAGAGGCACCTAAAAGAAGCCAGTTCATGTGGAAAACAGGTGTATGGGGTGTGTGTGTGGCCAGTGACTGTGGTTCGCTCGGCCTCCAGACTCGCTCAGTGTGGTGTGTCCATGCTGAAGGCTGGAGCACACATCAGTCCAACTGCTTTCCATCCGATCGCCCTGCGcatcagagagtgtgtgtgaagatGTGCGAGTGGCAAAAGGATCTGTTTGAGTGGCGCTTGTCTCCATGGGGCCCCTGCACTCCGAGTCCTCTCCTCCCAGCCAATCGATGCGTAACCGCTCAACGTGGAGTGCAGAGCCGCAATATGCAGTGTGTGAAGCGTAATAACAACTCCTCGGTGAGCCTACATGTGTGTGAAGCGTTTTCTTCAGCTCCAGAAGGAGAGCAGGCCTGTCTGTTACCTTGTCCGATGGATTGTGTCGTCTCCGCTTTCACCCACTGGTCCACTTGTAGCCGTACATGTGGGTCGGCTCTTCAACAGCGCACACGGGATGTCCTGGCCACACCCCTGTATGGAGGCATGGACTGCCCCAGTTTGACTCAGACACGCCCCTGTAGACATGAGCAAGGCCACCCCGCCCTCTGTCCTTCTGACCAACAGGAATACAGCTACAGTTTGTGGGCGGGGCCTTGGAGCCCTTGCAGAATTAAAGGGGTGGCACCTGTTGGGAAAACAACAGTGGATTTTAATTTGGGGAAAAGTACAGTCAGGACTTCCTATACAATAAAGCGGCACGCGGAAGGTTTTCATCGTCAAAATCATTACGATGAAAAAGGCTACAAAGTGTCCTGGGAGATCATCATTGGGTACCAGACTAGGCAGCTTCGCTGTTTGAGGAGCGACGGGAAGAACGCTATGCTGAGCCTTTGTGACCATGATAACAGCGCAGTGAACTTTCGCTCGTGCGTGATGCCCAGAGACTGTAAAGTGTCTGATTGGTCTCAGTGGAGTCTGTGTTCAAAGACCTGCCGCACATCTGACCCTTCGCCGGGCTTCAGGCACAGGAGCCGCAGCCTCATACAAGCAGCCATTGGTGGAGCAGAGCCGTGCCCCGTCCTGGAGGAAAAAGCAAACTGTAATATTTTGGAAGACGCACTACCGCTGTGCCCAAGGTATGAGTGGAGAGTCACCAGCTGGAACCCGTGCCAGGTGACTCCGCTTTTGAGTCAGCAGGACCATCGCCGTACCAATACCAGTGTCCTGTGTGGAGGTGGCATGAGGACCCGAGAGGCGTATTGTGTCCAGATTCAGGACAACACAGTGCCTTCTCATAGTAAGAACACTGGTTTCGATAAACCCAGTCGGCCTGTTGGGAAGAACTTGTGCACAGGGCCTTTGCCGCCATTGGCTGAGTTTTGCTTCATTCCCTGTCAGAAACATTGTCCCCTCACGCCTTGGTCGCCCTGGGGGCCCTGTCTCCATGACAACTGTTTGGAGCCTCAGGGGAGAAGAGGTTTCAAGATTAGAAGTCGTTCTGTAATTACGGAGTCTTGGGTCGAGTCTGACAGTTGCCCTCACGTCAGCGAAGCAATGACCTGCGATGACCCCGTCTGCTTCCTGTGGCGAGTGGCATCACTGGGGCCTTGTCTTCCTCTAAACGGATCATGTGGCCCAGGATTACAGGAGCAGACTCTGGAGTGTGTGTCTGCCTCAGGTGAGCCGGTCTCTAATGATCAGTGTCCAGAAGATCCTCCTGCGGTCCAGCGGTTATGTGAGATGCCCTGTCCTGGAGACTGTGTGCTCGGACACTGGGGGTTCTGGACCTCCTGTTCCcagtcctgctccagtaaacacCAAGAGGGGAAACAAAGTCGCTCACGTCTGGTTCTGGCTCTTCCTGGAGATTATGGAAAGCCGTGTCCTCCGGGCTCTGAGCTGGAGCAGTGGAGATCCTGCGGGGCACACTCGTGCACCGTCTACCACTGGGACGCTTCACCCTGGGATCCCTGCATGCCAAACACCATCACAGACAAGACTGAAAGAAACAGAACAGTCCAGATGGAGGATGACAGCACCTGCGGGACGGGGCTACAGACGCGCCAAGTCATATGCAGGAGGGCTGGGAATGGACATGTGCTGCCAAAACGATGTCCTGAGTCCTCTCGTCCAGACTCAGTACGGTCCTGTCCATTACCTTGCAAAGTTGACTGCATTGTTACAGCCTTTAGTGAATGGAGTGTCTGTCCCACTTCCTGTTTGTCAGTGAATGCTACTGTCTCAACCCAGTCCCGTCACAGGATTATCATCCAGAGACATGCTAACGGGGGCCAAGAGTGTCCAGATACTCTTTATGAAGAGAGGAACTGTGATCCACCTCCTCTGTGCCCAAcatacagATGGCAGACGCACCGCTGGCATCAGTGTGTTCTGGTACCCGATTCGGTGCGGCAGGCTGTTGGAGGACCCGCAGAGGCATGCGGCTCTGGCCTGGAGACAAGAGAGGTGACGTGTGTGGGTGCGGATGATGCTCCGGCAGAAATGGCCGAGTGTGTGAGCTGGGCAGGACTGATGCCCGTGTCAGTGAGGGAGTGTCGTGTGCCATGCAGAGATGAATGCAGCTTCACCTCCTGGAGCAGATTCAGTCAGTGTCGAGGCTGTGGAAGCTGGCGCACACGCACCCGATCTCTCATAGGTCGCAGTAAGAAGCGCTGGCGATGCCAACAGGAGGAGTTGTTTCCTCTGCTGGAGAAAGAAGCTTGTCCTTGTTCTGAATTTCACAGCAGGCCTCAGGGTCCCTGGTCTCCATGTTTACTCTCAGCAGTGAAGAGCACTGCTGGACGGCCTTTCATCCAAGGAGTTTTCCACCAAGGCCAGAAGGCAGTCCAGGACTGGCGAGGCCTTAGGAGGAGCAGCGAGTGTGGGCATGGGAGACGCTACAGAGCTCTGGTCTGTCTGGATCATCTGAGACAGCTGGTGGAGCCGGCGCTCTGCAGCAGCCCTGGTTATGAAGAGGAGTCGTGTCATGTGTCCTGCTCTACAGACTGTAAGCTGAGTGAATGGTCTCACTGGTCTGCCTGCAGCGCCTCCTGTGGTGGAGGTGTGAAAGTTCGCTCTCAGTGGCTGCGAGAAAAGCCCTTCAATGGAGGTCGACCCTGCCCAAAACTCAACTCCAAAAATCAGGTGTCTGAGGTACTGCCCTGTTACTCTGACTGCAGTCAGTATATTTGGGAAGTGCAATCCTGGTCTGTGTGCATCATAAATCCTCAGAATAACCTCACCAACATTAGACCAAACCATCAGCCTGTCTGTGGAGAGGGTTTCCGGACCTCCAAAATCCGCTGCTTGAAAAGGGGCGGAGAGAACCAGGATGAGGTTGTTGATAATTCGCTGTGCGATCTGGAGGAACGACCAAGCACAGCTGAGACCTGCCTGCTGCCATGCCCCGCCCACTGTGTGACATCAGAGTGGAGCCAGTGGACCAGATGTAGTGTGGACTGTAACGATGGAGATTTGAGCTGGAGGAGCAGAAGTGTTTTGAGGTGGCCTGAAGAAGATCACACCTGTCCTGAACTCAACCAGACTAAACCCTGCACCAACATGGCATGTCTCAAATACTCCTACGTTTACTCAGactgGAGCAGCTGTCAGCTCAGTGAAAGCGCAGTGTGTGGCCGTGGGATTAAGACTCGACTCCTGAACTGTGTGCGCAGTGATGGGAAACTGGTGGAGCTCAGCCTGTGCAAAGAGTTGGGTCCTTCACGTGGAAAGCTCTCAGCCCCCTGTGAAGTGGCGTGTCCTGTTAATTGCCTGATTACTGAGTGGTCCGCCTGGTCTGAGTGCTCACACACCTGTGGAGGCCAAAGTCAGAGGTCTCGGTCGAGGGTAGTTCTGCAGGCAGATAGTGAAGGAGGTCGACCATGTCCATCTCAGCTCTCCCAAACTCGGCCTTGTCCTATCAGGCCCTGCTACAGCTGGACACTGGCAGACTGGAGCCCCTGCAGGGTTGAGgGCGCTGACTGTGGCGAAGGAGTAAGTCGCAGGGAAAGGTCATGTGTGCTGCACTGGGGTTCTCTTTCAGGTCCTCCTCAGCCCGTACCTGTAGAGGATGAGAAGTGTGTTGGACATTTACAGAGTAAAGTCAGTGAGATTGAGTttctgcagccctgcacagtccCTTGTCCAGGAGAGTGTCACCTGACCCAGTGGTCGCCGTGGAGCTCATGTCAGCTGATGTGTCTGGATGGGCGGAGCTTTGAGACATGGGGTCGTCAGGCTCGATCCAGAGCTGTGGTCACTCAGGTGCAGGAGAACCAGGAGTCCTGTCCCAGCCAGACATACGAGACACGGCCATGCCAAGGAGGAACGTGTCTTAGTTATGAATGGATGACTGGTGAATGGAGGCATAACCGCAGACTGGTGTGGTGTCAGCGCTCGGATGGAGTCAACGTCACCGGAGGCTGCATGGCTGTTAACCAACCGTCTGCGGTACGACAGTGTCAACCTCCCTGCACCAAACCCTTCTCCTTCTGCAcgcagAATGGAGTCTGCGGATGTGAGAAGGGCTTCACAGAGGTCATGACGTCTCACGGGTTCCTCGATTACTGCACCAGAACCCCAGGACTGGACCATAAGAAGGCAGATGTGAAGAGCACTGCAGGCCGACTGAGGCCAGATTACACTCGAAACAATAAACATGTTAAGGACTGGACTCTGCAGCCTCTCGGACCTGATGGGCGTGTAAAGCTGTGGGTATATGGATTGATGGCGGCCGGGTTTGTTGTGATCCTTCTCCTCATCGTAATGTCCTTCCTGCTGTGTAAAAACCCCGAGGACAGTCCCAGCAGCAGTCCACAGAAGGCTCTAGCTCTGGCGTATGATGGAGACATGGATATGTGAGTCCAGCATGTGTATGCAATCCTGAAACATGTCAAAACAAACGGCTGCTTTCCTTCAGGCCACAACATCAACGTTTACAGCAGCACACAAGCTGAGCCAGATGGAGAACTGATGTTTAAACAGCACAAAGACTGAAACAGAGGCTGTGCTGAAGAACTGCAGAGAGGACAAAACATCAACCGAATGTACCATagcgtgagtgagtgtgtgtctgtcagtctgtttgtgtgcgtgtgtgtgcaaaagccgatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttagtcatCCATTTTGTTAATTGTAATGACATTTTTCTGTATGTTAAAAGAACTGTTGACTTTTaaagattgttcacccaaaaatcaaaatgACCTCATCGTTTATTCTTCatc

Function

GO:

id name namespace
GO:0031532 actin cytoskeleton reorganization biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-090708-2 Predicted to be involved in actin cytoskeleton reorganization. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human THSD7B (thrombospondin type 1 domain containing 7B).

Ensembl:

ensembl_id ENSDART00000165318

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008641 lncRNA upstream 285860 33312576 ~ 33342244 (+) False XLOC_003575
TCONS_00008410 lncRNA upstream 298346 33312693 ~ 33329758 (+) False XLOC_003575
TCONS_00008640 lncRNA upstream 403359 33218729 ~ 33224745 (+) True XLOC_003573
TCONS_00006986 lncRNA upstream 452423 33172345 ~ 33175681 (+) True XLOC_003572
TCONS_00006984 lncRNA upstream 452786 33172336 ~ 33175318 (+) False XLOC_003572
TCONS_00008642 lncRNA downstream 71336 33844208 ~ 33850289 (+) True XLOC_003579
TCONS_00008645 lncRNA downstream 624695 34397567 ~ 34402807 (+) False XLOC_003581
TCONS_00008646 lncRNA downstream 624695 34397567 ~ 34402807 (+) False XLOC_003581
TCONS_00008644 lncRNA downstream 624695 34397567 ~ 34402807 (+) False XLOC_003581
TCONS_00008643 lncRNA downstream 624695 34397567 ~ 34402807 (+) True XLOC_003581
TCONS_00006989 mRNA upstream 70011 33312601 ~ 33558093 (+) False XLOC_003575
TCONS_00006990 mRNA upstream 70011 33426254 ~ 33558093 (+) False XLOC_003575
TCONS_00006991 mRNA upstream 73313 33426510 ~ 33554791 (+) True XLOC_003575
TCONS_00006987 mRNA upstream 336206 33284837 ~ 33291898 (+) False XLOC_003574
TCONS_00006988 mRNA upstream 336714 33284918 ~ 33291390 (+) True XLOC_003574
TCONS_00006994 mRNA downstream 45307 33818179 ~ 33842715 (+) False XLOC_003578
TCONS_00006997 mRNA downstream 462500 34235372 ~ 34237802 (+) True XLOC_003580
TCONS_00006998 mRNA downstream 749682 34522554 ~ 34537304 (+) False XLOC_003582
TCONS_00006999 mRNA downstream 750260 34523132 ~ 34537126 (+) True XLOC_003582
TCONS_00007000 mRNA downstream 987756 34760628 ~ 34779622 (+) True XLOC_003584
TCONS_00006992 other upstream 199112 33428874 ~ 33428992 (+) True XLOC_003576
TCONS_00006982 other upstream 1031516 32596473 ~ 32596588 (+) True XLOC_003570
TCONS_00006976 other upstream 1436233 32191757 ~ 32191871 (+) True XLOC_003566
TCONS_00006975 other upstream 1642060 31985928 ~ 31986044 (+) True XLOC_003565
TCONS_00006974 other upstream 1704879 31923111 ~ 31923225 (+) True XLOC_003564
TCONS_00006995 other downstream 45317 33818189 ~ 33827111 (+) True XLOC_003578
TCONS_00006996 other downstream 462484 34235356 ~ 34237091 (+) False XLOC_003580
TCONS_00007005 other downstream 1275770 35048642 ~ 35055532 (+) False XLOC_003587
TCONS_00007007 other downstream 1320733 35093605 ~ 35093722 (+) True XLOC_003588
TCONS_00007020 other downstream 2582491 36355363 ~ 36369192 (+) True XLOC_003598

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_07609108_07637728.mRNA True 3651 mRNA 0.53 18 CI01000306 7609108 ~ 7637836 (+)