RNA id: TCONS_00006988


Basic Information

Item Value
RNA id TCONS_00006988
length 2698
RNA type mRNA
GC content 0.42
exon number 5
gene id XLOC_003574
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 33284837 ~ 33291898 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCTTCTTTGTCTACATGAAATATATCTGGAAACGAAGAATGGATATTAGTTCACGAGCAATTTTGCTGTAAACAGTGCCTAGAGGATTGCTAGCTAATTCTACTCTGAAAAAAGGCTGGCGATGTAACTCAGTTTTGTGATTTATAAAGACTGATAAATACAGAACCGATGGCAATCGAAAAGGtgACGGATATTCCCTCTGATAATGTATATGCTTATGCATTATCAAAAACCCTCACCAAAGTCTCTTCTCCGGTGACGGTGGGTTTGTATTCAGAATGTCACAACAGGATCAACATGGTGCTCAAGAACATTGAGGTTCATATGAATCAAGAGGGCAAAAGAAGGGAAGAGAAATACACCAAAGAACCAAAGCCTCGCTCAGTTAAACCCTCCATCTCTAACCTCATCTCTGTGATCTTCCGGCTCCTCTTCTGTCGGCCTGTGTGGACGGAACAGAACCAGAACATGAAGAACGTTCGCTATATTTTTGTCAGGTTCAGTGCATGGCATTTTGCAGGAAGTGACCTGCTTTGGGCTGGACTGGTAATGCAGTTGAGCAAAGCTCTTCAGCACAGCTTTGGAAAGCTCCAGTTGGCTCTTTTCCGGATAGCCCAATATGATGAAGAGGAAGATGCAAAGAAGAAGATGATCGAGGATATTCCAAAGAACTGGAGATCCAAAAAGTTGGGATGCATTCCCATTTGGGCACTAATACTAATGATAATCATTGCATCGCTCCTTATTTTGGTTCCCCTCATCATATTTGGATTTTCATATCTGAAGGGCGACCAACAAAATGAGGAATCAAGCAGTTATGGTGTGATTGAAGGTTTTGCCATCACTGCACTTGGTGTTCCTGCTGTAGGAGCTCTACGATTTATAATATTACTGTTGAAGAACCTAATTCTCAACCAGGATCTGAAAATTAGACAAGGACTGGACAACAAGAAGGTAAGTGAGCAGCTGGGACTAATGCATGAAGTTCGGAAGGAGATGAGGCTTCTGTGCTGCTTCATTTTCTTTATGGAGATCTTTGAAAGAAGGAGGATCAGGGTAGTGCTGGAGATCACCAACTTGGACCGCTGTACGCCAAAGAAAATTGTAGGGGTTTTGGACGCCATTAACATCCTCCTATCTGATGACGAGAGCCCCTTCATTTCTGTGCTTGCTGTTGATCCGGAAGTTCTTGTTAGGCAGGTCCAACAGGCAGAAGATTGCTTAAGGAAGAGAAACACTGCATACGACTTTCTAGACCGTATAATCACATTGCCTTTCACTGTACCTCCGCTTTCAGATTCATCAAAGTCAAGTGTCTTTGAAAACATTGTTCGTGGTCAATCAGAGATCCCTGAAGAGATTCCTCTTGAGACTGGAGCATCTACTTTTAAAGGTCCTGGGACATCATTTTCTGTTGAAGATGAGTATTCTGTAAGGTTCGATGAGACTAAAGAAGAACAAGAGATTCCTTTAATTggaaaaaaagcaaacaatgaaACATTTGCTGTAGCAGAACTTAATCTAGAAGACGTAGACAGGTTTATCGAATCTGCATTTACCTTCATATTTTCAAGAGATACAAGCaaacttaataaatatttgtCTGGAGACACTATGTCCATGAGACGAGTGATCAACTCCATTAGAGTAACTATCATGATCATGGAGATCCGAAAATTGGAGCCTCCACATCCTGAGAAAATTGCAGCATGGATTGTTTTGTTGGATCGCTGGCCTTGCAGAGTGAGTTGGATTCTTCAATGCGTTGAAGATGACCAACAGAGTTATGAAATAGATGATTCATCCTGTGCTGCCGATGCTACCAAGACAATATGGGAAGTGTTCAATTACAACAGTCTGGAGCTCTGCATGATTGAACATGCAGTGGAGAACTTTCTGGAAAGAGATGGGGACCCTGAGCTTTTTGAGATTTTCCTTAGGAAAGACTTCAAGTTCACTGTTAGGGAGCTGGAAATGTTTAAGCTCTGCACAGTGAACCTAAACTACTCCATCAAGAAGGAGTTGGCCAGGGTCCGTGGGAGACGCAGACTGAGGAGAGCAGGGAGAAATGCTTTCCAATCCATCTCATCACGAACTCTAATGAACATGAACCCCGAAGATATCTGTCAAgagATGACAAAACTAAGCCTCCCAGAGAAATACCTCGAAACGGTAAGGACAAATTTCATAGATGGCAGAACAATCCTCTTCGGTGACCCCAAAGACCTCAGGCAAGTCCTGCAAATGACTCTGGGTGAATGGATGACTTTTAAATTTCATTTCCTTGGGGTCACACCTTCTAGTCGACCGGCTCAACCACAAAGTCATCTAGCCGCCACAAACCCTGGAGTGGTCATATGCCCATCTGGCCATGGCCGGTAAGCAGGATAACTGACCTTGAGGTTTGCATCGTTGCATTTTCCTCATGTGTATGCTTTCAGTGGACTATGATTGTTTCAGGAAACAATACTGCATCCCTACATAAATATAATTCCCTTACGGCAGAGCGAAAAAACAAGACTGTAAATGTACACCAGTGAATCAGACTGCTCAACAAAAGTGCTACTTGAAAACAGCTTTGTTATTCAGAAAAATCTTTTAGCATTCAAACAGATCAAATTTGTTAGATGCATTATTTATAATGGGAACAAGACATTTCATTTCTTTTAAGCATTAGGAAGATTTTCAAATGGTTCT

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-141215-19 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human NKPD1 (NTPase KAP family P-loop domain containing 1).

Ensembl:

ensembl_id ENSDART00000111412

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008640 lncRNA upstream 60173 33218729 ~ 33224745 (+) True XLOC_003573
TCONS_00006986 lncRNA upstream 109237 33172345 ~ 33175681 (+) True XLOC_003572
TCONS_00006984 lncRNA upstream 109600 33172336 ~ 33175318 (+) False XLOC_003572
TCONS_00006985 lncRNA upstream 110586 33172338 ~ 33174332 (+) False XLOC_003572
TCONS_00006983 lncRNA upstream 524750 32752320 ~ 32760168 (+) True XLOC_003571
TCONS_00008641 lncRNA downstream 21186 33312576 ~ 33342244 (+) False XLOC_003575
TCONS_00008410 lncRNA downstream 21303 33312693 ~ 33329758 (+) False XLOC_003575
TCONS_00008642 lncRNA downstream 552818 33844208 ~ 33850289 (+) True XLOC_003579
TCONS_00008645 lncRNA downstream 1106177 34397567 ~ 34402807 (+) False XLOC_003581
TCONS_00008646 lncRNA downstream 1106177 34397567 ~ 34402807 (+) False XLOC_003581
TCONS_00006973 mRNA upstream 1129706 31864921 ~ 32155212 (+) True XLOC_003562
TCONS_00006969 mRNA upstream 1219884 31680513 ~ 32065034 (+) False XLOC_003562
TCONS_00006970 mRNA upstream 1459032 31680557 ~ 31825886 (+) False XLOC_003562
TCONS_00006971 mRNA upstream 1459034 31730680 ~ 31825884 (+) False XLOC_003562
TCONS_00006966 mRNA upstream 1663244 31609481 ~ 31621674 (+) True XLOC_003560
TCONS_00006989 mRNA downstream 21211 33312601 ~ 33558093 (+) False XLOC_003575
TCONS_00006990 mRNA downstream 134864 33426254 ~ 33558093 (+) False XLOC_003575
TCONS_00006991 mRNA downstream 135120 33426510 ~ 33554791 (+) True XLOC_003575
TCONS_00006993 mRNA downstream 336714 33628104 ~ 33772872 (+) True XLOC_003577
TCONS_00006994 mRNA downstream 526789 33818179 ~ 33842715 (+) False XLOC_003578
TCONS_00006982 other upstream 688330 32596473 ~ 32596588 (+) True XLOC_003570
TCONS_00006976 other upstream 1093047 32191757 ~ 32191871 (+) True XLOC_003566
TCONS_00006975 other upstream 1298874 31985928 ~ 31986044 (+) True XLOC_003565
TCONS_00006974 other upstream 1361693 31923111 ~ 31923225 (+) True XLOC_003564
TCONS_00006972 other upstream 1444729 31840068 ~ 31840189 (+) True XLOC_003563
TCONS_00006992 other downstream 137484 33428874 ~ 33428992 (+) True XLOC_003576
TCONS_00006995 other downstream 526799 33818189 ~ 33827111 (+) True XLOC_003578
TCONS_00006996 other downstream 943966 34235356 ~ 34237091 (+) False XLOC_003580
TCONS_00007005 other downstream 1757252 35048642 ~ 35055532 (+) False XLOC_003587
TCONS_00007007 other downstream 1802215 35093605 ~ 35093722 (+) True XLOC_003588

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_07386318_07389827.mRNA True 2606 mRNA 0.42 5 CI01000306 7386318 ~ 7390040 (+)