XLOC_003562 (diaph3)


Basic Information

Item Value
gene id XLOC_003562
gene name diaph3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 31680513 ~ 32155212 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006969
GAGGCGGGAGTTTTTGTTTGCCTGTCATTCGTCATAACTTTTCCACCTATTTCATTTCTGCTCTAGTTTTTACGAACACGGACAGCAAACACGCTTTTCTGATACTGGCTTTTTGCATCACAGgagtgttttttaaaaacatttacatcaATGTACGGTTTGAAAAGAGGTGTTAGTGACATCTAAGGAGCTGGCAATTGGATTACCGTCGTTAGCCGATTTATTAGACAACAACTAACTTAACTTACTGTCAAGGGGCGCTTCTCGTGCACGTTCACCCGCGAGTCAGCTTAATCCGTGCTCGCGCTTGTCTCTTTCATCGGTCAACCTCAGAGGCATAATGAGCCAGTAAACACGGAAACTTCGTAGAGATAGTTTTTATAGATTCACTTAAATATGGACAACTACCGCCAACCAAGATATGAAGGCTCGAGTCAAGGAAGAGAGAATAAATTTAACCGCAAGAAAGGATTTGGAGTCGGAGTGTCATCTCAGGGCGGTTCAAGTGGGGATGACGGAGAGAAGAAGCCTAAATTTTTGGACAGATTTTCCAGTATCCGGATCCCTGGCAGTAAAAAGGAACGGCCAAATCTCTCCCACATGTCCAAGCACTCCTCTTCTGGTGACTGGTCATCTTCCTCTGAATTTGAGGAGCTTTCTTCAAGAATCACATCAGAGAAAGAAATCCTTGCCCTCTTTGAGAAAATGATGGAGGATATGAATCTTAATGAGGAGAAGAAAGCACCACTAAGAGAGAAGGACTTAAACACGAAAAGAGAGATGGTTCTTCAGTACGTCGTCACAGCTGCAAAAACCgGTAGTTTGAGGAGCAGCAGTCAGATCTCTCCTCAGGAGTTTCTGAGTGAACTAAAAAGCGGTGCCACCGATGAGAGACTGTTTGCCTGTCTGGACTCCCTCAGAGTGTCACTCACCAGCAACCCAGTCAGCTGGGTGCAGAGTTTTGGCCATGAGGGTCTGGGTCTCCTGTTGGATACGCTGGAGAAGCTCCTCCTCAAAAAACAccaAGAGAAGGTGGATAAGAAGAGTCAACACAAAGTCATTCAGTGCCTGAAGGCTTTTATGAACAACAAGTATGGACTTGAGCGGATCCTTGGAGAGGAGACGAGTCTGGCACTGTTGGCCCAAGCCATTGACCCTTGTCAGCCGGCCATGATGACAGATGTGGTCAAACTGCTCTCTGCAATCTGCATTGTGGGAGAAGAAAATACTTTGGAGAAGGTCCTTGAAGCCATCACCACGGCAACAGAAGGAAGAGGGGTGGCCCGATTTAACCCAATCGTCCAAGGCCTTAGTGTTCGCTCCGTCCAGTTACAGGTGGCTTGCATGCAGCTCATCAATGCCCTCGTAACGTCTCCTGATGAGTTGGACTTCAGGCTGCACATCCGAAATGAatttatgcgctgcggcctgcgAGAGATCCTGCCGAGCCTGAGTGTTGTAAAAAATGATGCTCTGGATATCCAGCTGAAGGTCTTTGAGGAACACAAGGAGGAGGACATGATTGAGTTCTCCCATCGCCTGGAGGACATCAGGATGCATACTGATATTGGGGATGTCTTTAATGTATTGTACTGTTCTGTGAAGGACTCAGCCGCTGAGAGCTATTTTCTATCCATACTGCAGCACCTGCTACTGGTCAGGAATGACTATTTCACACGGCCTCAGTATTTTAAGATCATAGAAGAGTGTGTCTCTCAAATCGTCCTTCATCGAAGCGGCACAGATCCTGACTTTGGCTATCGCAAACGTCTGGATGTGGACTTCAGCCATCTATTAGAAGTGTGTGTGGAAAAAGCAAGGACTGAGGAGTTTGAACTGAGGGCCTCAGAGTTGGCTCAAAAGttggATGAGGAGTTCTTGGGCAGACAGGAAGCTGAAGCCCAGCTTTTGAAGAGGGAGGAGAAGATCAATGAGCTGGAAGCAGAACTTCAGGCTCATAGAAACCAGTTTGGAGCTGTTCCAGGGGTCTTACCATCATCCTCATCCACATTTCCACCTCccccacctcctcctcctccaccatttgttcctggaggtccagctCCGCCGCCCCCTCCACCTCCACCACCTCCACCAGGCTGTGCCTCCATACCTGGGATGCCTCCACCCCCTCCACCTCCTCTAGGACTGGGTGCACTGACATCCGCAAACCAATACATCCTGCCTTTCGGCCTGAAACCCAAGAAGGAGTTCAAGCCTGATACCTCCATGAAGCGCCTCAATTGGTCCAAGATCTCACCCCAGGAGCTGTCCGAGAATTGTTTTTGGGTCATCGCCAAAGAGGATCGTTATGAGAACGAAGACCTGCTCACCAGGCTGTCTGTTACCTTCGGCACACAGCGAGTCGCTCGAAGAGAAGAGGAGGACCTTGAGGAGAAGAAATGCATCAAAAAGAGAGTGAAGGAACTGAAAGTGCTGGACCCGAAGATAGCACAGAACCTTTCCATTTTCCTTGGGTCGTTCCGTATGCCCTACGAGGAGATCAGGAGAATGATTTTAGAGGTGGATGAGGATCAGCTGACTGAGCCCATGATCCAGaaTCTGGTGAAGCATCTGCCTGAACAGGAGCAGCTGAACGCACTGGTCAAGTACAAGAGTGAATATGCCAACCTCTCAGAACCAGAGCAGTTTGGAGTCGTGATGAGTAGTGTGAAACGTCTGAGACCCAGGCTCAACTCCATCCTGTTCAAGCTGCAGTTTGAGGAGCAGGTCAATCATTTGCGTCCAGACATCATGGCGGTGAACGCAGCCTGCGATGAGGTGAGGAAAAGCAAATCCTTCAGCCGGCTCCTGGAGCTCATTCTGCTCACGGGGAACTTTATGAACGCCGGATCAAGGAACGCCCAGTCTTTCGGCTACAACCTCAGCTCACTCTGCAAGCTGAAGGACACTAAATCGACTGATCAGAAGTCCACCCTTCTGCACTTCCTGGCAGAGATCTGCGAAGAAAAATTCCCAGAAGTGCTGAAGTTTGTGGATGATCTGCAGCATGTGGACCGGGCCAGTCGAGTATCGGCAGAAAACCTTGAGAAGAGCCTGAAACAGATGGAGAAACACCTGCTGCAGTTGGAGAAGGATCTGGACACATTCAGCTCCACAGACGATCAACAGGACCTGTTCCACAGCAAGATGGCAATATCCTTTTTACACGCGAGAGATCAGTACCAGAAGCTAGTGGTCATGCACAGTAATATGGTGACCCTTTACCTCAACATGCTGGAGTATTTCGCCATCGACCCCAAAAAGACTTCTGTGGAGGAACTCTTCACTGACCTCAGCAACTTCAGAGCAATGTTCATGCAAGCAATGAAGGAGAACATAAGGAGAAAAGAGGCAGAGGAGAAACAGAGGAAAGCAAGGATAGCCAAAGAAAAAGCAGAACGAGAGAAAAAAGAGCGGCAGATGAAGAAGAAGCGACTGCTGGAGGTCAACACAGAGAACGATCAGACCGGTGTGATGGATTGTCTGCTGGAGGCGCTGCAGTCTGGAGCCGCTTTCAGAGACCGCCGGAAAAGAGCACCCAGACCCCGAGGTGAACCAACACAAACATTCAGCCCAAGTCCACAAAGACCTGTTCTGAAAGACTGCCACCACGGTAAAAATAAGagttaaaaagagagaaaaatagcAGCTCTCTCCACTGTTTGCTTTCCGTTTGTCTTCTTCGCTATTAACTGCATTAATATTACCTGCTTACGCTCATTTACCAGCCCTGACTGTCTTTTCTCCTTGGGTTAATGTCTGTGGTGCCCTGTTCAATCATGCATCACTCTTCCTATTGATTTTTCACTGTCTTAGACCCAATGATGGTCTATAGTAGGTCCAAATCTGGCCAATTGCTTATTTTAAGTGCTTATAACAGATCCTCAAGGCCTTTGTAAATGGCCAGCATGATGGAAACAATAGCAGACATGTTTTTTCTTTCAGCTTCTTATGGTTCTTGTCATAAACTCAACAGGTGTTACAATGTGATATAGATTCAAGAAACGTTTCAATCTTATTTAACTGCAGATATTTATTTTCTGCCAGAACAGCAGTGGTGCTGGTGCTCAGCTTGcagattctgtgtgtttgtgttttcgccGACTTGAAAGCCGAACAATGATTTAACTGACTGTTACGTTATAAGCTgcccacaaacaaacaaactgaatcaTGGGCTTCATTTAAAAGTCTTATTCTTGGGTTTGGGAATATATTTGAATATCCAAAGTAATTGAATTCAGGTTTGTGTTGTCGAAATCAAAGCTTATTTATTCTTTCTTGGAAAAAAACAGctcctgtttgttttgttattttgttagatcTTGTGTTTATGCATGTA
>TCONS_00006970
ACCTATTTCATTTCTGCTCTAGTTTTTACGAACACGGACAGCAAACACGCTTTTCTGATACTGGCTTTTTGCATCACAGgagtgttttttaaaaacatttacatcaATGTACGGTTTGAAAAGAGGTGTTAGTGACATCTAAGGAGCTGGCAATTGGATTACCGTCGTTAGCCGATTTATTAGACAACAACTAACTTAACTTACTGTCAAGGGGCGCTTCTCGTGCACGTTCACCCGCGAGTCAGCTTAATCCGTGCTCGCGCTTGTCTCTTTCATCGGTCAACCTCAGAGGCATAATGAGCCAGTAAACACGGAAACTTCGTAGAGATAGTTTTTATAGATTCACTTAAATATGGACAACTACCGCCAACCAAGATATGAAGGCTCGAGTCAAGGAAGAGAGAATAAATTTAACCGCAAGAAAGGATTTGGAGTCGGAGTGTCATCTCAGGGCGGTTCAAGTGGGGATGACGGAGAGAAGAAGCCTAAATTTTTGGACAGATTTTCCAGTATCCGGATCCCTGGCAGTAAAAAGGAACGGCCAAATCTCTCCCACATGTCCAAGCACTCCTCTTCTGGTGACTGGTCATCTTCCTCTGAATTTGAGGAGCTTTCTTCAAGAATCACATCAGAGAAAGAAATCCTTGCCCTCTTTGAGAAAATGATGGAGGATATGAATCTTAATGAGGAGAAGAAAGCACCACTAAGAGAGAAGGACTTAAACACGAAAAGAGAGATGGTTCTTCAGTACGTCGTCACAGCTGCAAAAACCgGTAGTTTGAGGAGCAGCAGTCAGATCTCTCCTCAGGAGTTTCTGAGTGAACTAAAAAGCGGTGCCACCGATGAGAGACTGTTTGCCTGTCTGGACTCCCTCAGAGTGTCACTCACCAGCAACCCAGTCAGCTGGGTGCAGAGTTTTGGCCATGAGGGTCTGGGTCTCCTGTTGGATACGCTGGAGAAGCTCCTCCTCAAAAAACAccaAGAGAAGGTGGATAAGAAGAGTCAACACAAAGTCATTCAGTGCCTGAAGGCTTTTATGAACAACAAGGTAATAACGTCACCGAGCTGCAGGGTCTCAAGTTCCTCTCACTTAATAATTGTCATCTCAAAGCGAACAGTTATCAGTTTTAAACATGCACATACAAAGTATAGCTAAATATAGTTGTGTAGACTCCTTTCAATGTGACGTCCACGGTTCTTCACTTCTATTGGTGGTGGTGATGTCATGGTATATTTGCATAAATTATGTTCAGCTTTGAAAATGTTGCACATTGTCACCCGCCCCCAGAAAGAATGTTCAGTTTTTAATAATAGCCAGGCATTCTTCTAGTATTATATATGTATCCTGTTGGATATGCTGTAGAAAAACGcataatttgcaaaaaaaaatgtatatataaataaataaatactttacat
>TCONS_00006971
GAGGATATGAATCTTAATGAGGAGAAGAAAGCACCACTAAGAGAGAAGGACTTAAACACGAAAAGAGAGATGGTTCTTCAGTACGTCGTCACAGCTGCAAAAACCgGTAGTTTGAGGAGCAGCAGTCAGATCTCTCCTCAGGAGTTTCTGAGTGAACTAAAAAGCGGTGCCACCGATGAGAGACTGTTTGCCTGTCTGGACTCCCTCAGAGTGTCACTCACCAGCAACCCAGTCAGCTGGGTGCAGAGTTTTGGCCATGAGGGTCTGGGTCTCCTGTTGGATACGCTGGAGAAGCTCCTCCTCAAAAAACAccaAGAGAAGGTGGATAAGAAGAGTCAACACAAAGTCATTCAGTGCCTGAAGGCTTTTATGAACAACAAGGTAATAACGTCACCGAGCTGCAGGGTCTCAAGTTCCTCTCACTTAATAATTGTCATCTCAAAGCGAACAGTTATCAGTTTTAAACATGCACATACAAAGTATAGCTAAATATAGTTGTGTAGACTCCTTTCAATGTGACGTCCACGGTTCTTCACTTCTATTGGTGGTGGTGATGTCATGGTATATTTGCATAAATTATGTTCAGCTTTGAAAATGTTGCACATTGTCACCCGCCCCCAGAAAGAATGTTCAGTTTTTAATAATAGCCAGGCATTCTTCTAGTATTATATATGTATCCTGTTGGATATGCTGTAGAAAAACGcataatttgcaaaaaaaaatgtatatataaataaataaatactttac
>TCONS_00006973
ATTGCTGTGATGGATTTGTGTTTGTATTTTCTTTAAACAATTGTCTTTGCtgacatggtttttgtttttcagttggATGAGGAGTTCTTGGGCAGACAGGAAGCTGAAGCCCAGCTTTTGAAGAGGGAGGAGAAGATCAATGAGCTGGAAGCAGAACTTCAGGCTCATAGAAACCAGTTTGGAGCTGTTCCAGGGGTCTTACCATCATCCTCATCCACATTTCCACCTCccccacctcctcctcctccaccatttgttcctggaggtccagctCCGCCGCCCCCTCCACCTCCACCACCTCCACCAGGCTGTGCCTCCATACCTGGGATGCCTCCACCCCCTCCACCTCCTCTAGGACTGGGTGCACTGACATCCGCAAACCAATACATCCTGCCTTTCGGCCTGAAACCCAAGAAGGAGTTCAAGCCTGATACCTCCATGAAGCGCCTCAATTGGTCCAAGATCTCACCCCAGGAGCTGTCCGAGAATTGTTTTTGGGTCATCGCCAAAGAGGATCGTTATGAGAACGAAGACCTGCTCACCAGGCTGTCTGTTACCTTCGGCACACAGCGAGTCGCTCGAAGAGAAGAGGAGGACCTTGAGGAGAAGAAATGCATCAAAAAGAGAGTGAAGGAACTGAAAGTGCTGGACCCGAAGATAGCACAGAACCTTTCCATTTTCCTTGGGTCGTTCCGTATGCCCTACGAGGAGATCAGGAGAATGATTTTAGAGGTGGATGAGGATCAGCTGACTGAGCCCATGATCCAGaaTCTGGTGAAGCATCTGCCTGAACAGGAGCAGCTGAACGCACTGGTCAAGTACAAGAGTGAATATGCCAACCTCTCAGAACCAGAGCAGTTTGGAGTCGTGATGAGTAGTGTGAAACGTCTGAGACCCAGGCTCAACTCCATCCTGTTCAAGCTGCAGTTTGAGGAGCAGGTCAATCATTTGCGTCCAGACATCATGGCGGTGAACGCAGCCTGCGATGAGGTGAGGAAAAGCAAATCCTTCAGCCGGCTCCTGGAGCTCATTCTGCTCACGGGGAACTTTATGAACGCCGGATCAAGGAACGCCCAGTCTTTCGGCTACAACCTCAGCTCACTCTGCAAGCTGAAGGACACTAAATCGACTGATCAGAAGTCCACCCTTCTGCACTTCCTGGCAGAGATCTGCGAAGAAAAATTCCCAGAAGTGCTGAAGTTTGTGGATGATCTGCAGCATGTGGACCGGGCCAGTCGAGTATCGGCAGAAAACCTTGAGAAGAGCCTGAAACAGATGGAGAAACACCTGCTGCAGTTGGAGAAGGATCTGGACACATTCAGCTCCACAGACGATCAACAGGACCTGTTCCACAGCAAGATGGCAAGTTTCTCCACGCAGGCGAGAGATCAGTACCAGAAGCTAGTGGTCATGCACAGTAATATGGTGACCCTTTACCTCAACATGCTGGAGTATTTCGCCATCGACCCCAAAAAGACTTCTGTGGAGGAACTCTTCACTGACCTCAGCAACTTCAGAGCAATGTTCATGCAAGCAATGAAGGAGAACATAAGGAGAAAAGAGGCAGAGGAGAAACAGAGGAAAGCAAGGATAGCCAAAGAAAAAGCAGAACGAGAGAAAAAAGAGCGGCAGATGAAGAAGAAGCGACTGCTGGAGGTCAACACAGAGAACGATCAGACCGGTGTGATGGATTGTCTGCTGGAGGCGCTGCAGTCTGGAGCCGCTTTCAGAGACCGCCGGAAAAGAGCACCCAGACCCCGAGGTGAACCAACACAAACATTCAGCCCAAGTCCACAAAGACCTGTTCTGAAAGACTGCCACCACGAAAACATGAAGGCATCTCTGCAAAGGTCACGGTCGCGGCAGAATATCAATTTAAACTCGACACGAGCACCCACTGCCAAGGAGCCTCATTACGAGAGCGAACCCCATCCGTCTGCAGCCCACAAGCCGACCCACCGgcctgagagagagaaagaaaaagccAAAGAGCGAGAGAAGGAAAAAGAGCAAACTCCCATGCTTTGCTCATCCAATGGTGACAGCGACGTCGAGGCCTTGCTCGCCCGCCTGCGTGCCCTATGA

Function

symbol description
diaph3 Predicted to enable actin binding activity. Predicted to act upstream of or within actin cytoskeleton organization. Human ortholog(s) of this gene implicated in autosomal dominant auditory neuropathy 1. Orthologous to human DIAPH3 (diaphanous related formin 3).

GO:

id name namespace
GO:0030036 actin cytoskeleton organization biological_process
GO:0016043 cellular component organization biological_process
GO:0005575 cellular_component cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
ko04810 Regulation of actin cytoskeleton

ZFIN:

id description
ZDB-GENE-040801-144 Predicted to enable actin binding activity. Predicted to act upstream of or within actin cytoskeleton organization. Human ortholog(s) of this gene implicated in autosomal dominant auditory neuropathy 1. Orthologous to human DIAPH3 (diaphanous related formin 3).

Ensembl:

ensembl_id ENSDARG00000090785

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006969 False 4345 mRNA 0.47 26 31680513 32065034
TCONS_00006970 False 1419 mRNA 0.42 6 31680557 31825886
TCONS_00006971 False 750 mRNA 0.41 4 31730680 31825884
TCONS_00006973 True 2085 mRNA 0.51 14 31864921 32155212

Neighbor

gene id symbol gene type direction distance location
XLOC_003561 NA coding upstream 9100 31625171 ~ 31671413 (+)
XLOC_003560 zgc:162816 coding upstream 58839 31609481 ~ 31621674 (+)
XLOC_003559 egln1b coding upstream 76821 31558006 ~ 31603692 (+)
XLOC_003558 sipa1l2 coding upstream 206531 31323746 ~ 31473982 (+)
XLOC_003557 NA coding upstream 359974 31284984 ~ 31320539 (+)
XLOC_003566 CABZ01011390.1 coding downstream 36545 32191757 ~ 32191871 (+)
XLOC_003567 NA coding downstream 67905 32223117 ~ 32227485 (+)
XLOC_003568 CR589875.4 coding downstream 245992 32401204 ~ 32420538 (+)
XLOC_003569 CR589875.2 coding downstream 350163 32505375 ~ 32510295 (+)
XLOC_003570 CR589875.3 coding downstream 441261 32596473 ~ 32596588 (+)
XLOC_003369 CR854846.2 misc upstream 15557431 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 18968517 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 18986250 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 18994914 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 19000485 12679732 ~ 12680028 (+)
XLOC_003554 NA non-coding upstream 467744 31204986 ~ 31212769 (+)
XLOC_003555 NA non-coding upstream 470626 31205483 ~ 31209887 (+)
XLOC_003551 CR855274.2 non-coding upstream 625225 31047854 ~ 31055288 (+)

Expression


Co-expression Network