XLOC_003560 (zgc:162816)


Basic Information

Item Value
gene id XLOC_003560
gene name zgc:162816
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 31609481 ~ 31621674 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006965
ATTGATAAATGTTTGCCCAATCTCGTCAGGAGCTTTAAGTTTGAAAAACTGCAGTATGAGTCTCTTGTTGTGTCGCTTTGGTTCTGGCTTCACCCCGGCCACGGCTTTCTCATTGATCACATCTAGAGCTGCAGCTTTTCGTTTTTCTAGCACAATGGCCTCAGTTGAATTCATCAAAGACCTTTGTACTCCAGCGCTGGTCGTTGACCTGGATAAAGTGAAGAGAAACGCTGAAGGAATGAAGGAGCGATGCCAGAAACTACAAGTCCAGCTGAGACCTCACatgaaaacacacaaaacactGGAATGTGCGGACATCATGACAGGAGGCTCTCGTCGCTGTATCGTGGTGTCAACTCTTGCTGAGGCCTCTTTCTATGCTGATAACGGTTATGATGATATACTGTACGCATATCCTCTGCCGTTTGATAAAGTGGAGCGTTGTGCTGAGCTGTCTGAGAGACTCTCTCTGTTCCACGTGCTGCTGGACAACACTCTGGCCCTGCAGGAGCTGAAGAAGAGGCCGCTGAAGCAGGGAAAAGTCTGGAGCGTCTGGATGAAGCTGGACTGTGACAACGGAAGAGcGGGTGTTCCTCACTATGAGCCAGCAGCGCTGCAGCTCGCTCAGGAGATCTGGCAGACGGAGGGGGTGGAGCTGACCGGTGTTTACGCCCATTGTGGAAACACCTACAGCTGTCAGGGGGAGGAGCAAATCAAAGCCGTCGCCCAGCAAACCACTACAGTCACACTCCAGTTCATGGACAAACTGAAGGCTGCAGGAATACACAGTACCAAATCCAGCATTGGCTCTACCCCTTCCTGCAGTCACCCAGTGCCAGACATGGCCAAGCTGAGTGAGGTGCATCCTGGGAACTACGTATTCTATGATGTTCAGCAGTCCCTCATTGGGTCGTGTAGGCTTGAGGATGTGGCAGTCCGGGTGTTAACGCGGGTCATCGGGCATTACCCCCGCCGAAACCAGTTACTAGTGGACTGTGGCTGGACAGCACTGAGTCATGATGGAGGGGGGCGGTTGCCTACAGGATACGCCATTATTGAAGGGCATCCAGAGCTCAAACTCCTGTCTATGACTCAGGAACACGGCAGGGTGGAGCCCGTCTCTGGAAAGCTGGACTTCAAGCAGTTCCCGCTGGGGTCCCTGCTCACCCTCATGCCTTACCACGCTTGTGCCACCGCCATGATGCATCCGGTTTATTTTGTCCACTCTAAAGGGAAAATTGTGGACACGTGGAAACCCACTCGAGGCTGGTAACAATCCCTAACACAGAAACACTGCTCCAGCTGCTTTATAACGCAGGTGTCTGTAAGAAACTAACCGTAAGAGCTTGCTGATTCTGAGCCAAATGCATTATGGGCAGTTCTGTCCTTGAGGAGCACTTGTTCTTGAAAATGTAATATTTCAGCAAAAAAGGCTTTGTGTAAACTAGAATGCTCACATCGAGAATTACAGTCTtcgttttagatgttttttttttctgtgtaacacacatacacaagggCACACAATTACAATCTCTGCACACTCATGAAAGACTGTGAAAAGACTGTGATTTGGTCTTTGTATCTGAATGATCTTGCATGCGGGATGTTTTATGTGCTCCAAAAGAGCTTTGGAAGGATCTGAAATGTCTGAATTTGTGCTTTTCACTTCTCGCACTTCACATAAAGCCACAGCGAAGGTGTTTAAAGATCAGATTCTCTGATGGCTTTTTCATATATTTGCCTTTTATGTTCCCAGTTGATGAATTC
>TCONS_00006966
ATTGATAAATGTTTGCCCAATCTCGTCAGGAGCTTTAAGTTTGAAAAACTGCAGTATGAGTCTCTTGTTGTGTCGCTTTGGTTCTGGCTTCACCCCGGCCACGGCTTTCTCATTGATCACATCTAGAGCTGCAGCTTTTCGTTTTTCTAGCACAATGGCCTCAGTTGAATTCATCAAAGACCTTTGTACTCCAGCGCTGGTCGTTGACCTGGATAAAGTGAAGAGAAACGCTGAAGGAATGAAGGAGCGATGCCAGAAACTACAAGTCCAGCTGAGACCTCACatgaaaacacacaaaacactGGAATGTGCGGACATCATGACAGGAGGCTCTCGTCGCTGTATCGTGGTGTCAACTCTTGCTGAGGCCTCTTTCTATGCTGATAACGGTTATGATGATATACTGTACGCATATCCTCTGCCGTTTGATAAAGTGGAGCGTTGTGCTGAGCTGTCTGAGAGACTCTCTCTGTTCCACGTGCTGCTGGACAACACTCTGGCCCTGCAGGAGCTGAAGAAGAGGCCGCTGAAGCAGGAGATCTGGCAGACGGAGGGGGTGGAGCTGACCGGTGTTTACGCCCATTGTGGAAACACCTACAGCTGTCAGGGGGAGGAGCAAATCAAAGCCGTCGCCCAGCAAACCACTACAGTCACACTCCAGTTCATGGACAAACTGAAGGCTGCAGGAATACACAGTACCAAATCCAGCATTGGCTCTACCCCTTCCTGCAGTCACCCAGTGCCAGACATGGCCAAGCTGAGTGAGGTGCATCCTGGGAACTACGTATTCTATGATGTTCAGCAGTCCCTCATTGGGTCGTGTAGGCTTGAGGATGTGGCAGTCCGGGTGTTAACGCGGGTCATCGGGCATTACCCCCGCCGAAACCAGTTACTAGTGGACTGTGGCTGGACAGCACTGAGTCATGATGGAGGGGGGCGGTTGCCTACAGGATACGCCATTATTGAAGGGCATCCAGAGCTCAAACTCCTGTCTATGACTCAGGAACACGGCAGGGTGGAGCCCGTCTCTGGAAAGCTGGACTTCAAGCAGTTCCCGCTGGGGTCCCTGCTCACCCTCATGCCTTACCACGCTTGTGCCACCGCCATGATGCATCCGGTTTATTTTGTCCACTCTAAAGGGAAAATTGTGGACACGTGGAAACCCACTCGAGGCTGGTAACAATCCCTAACACAGAAACACTGCTCCAGCTGCTTTATAACGCAGGTGTCTGTAAGAAACTAACCGTAAGAGCTTGCTGATTCTGAGCCAAATGCATTATGGGCAGTTCTGTCCTTGAGGAGCACTTGTTCTTGAAAATGTAATATTTCAGCAAAAAAGGCTTTGTGTAAACTAGAATGCTCACATCGAGAATTACAGTCTtcgttttagatgttttttttttctgtgtaacacacatacacaagggCACACAATTACAATCTCTGCACACTCATGAAAGACTGTGAAAAGACTGTGATTTGGTCTTTGTATCTGAATGATCTTGCATGCGGGATGTTTTATGTGCTCCAAAAGAGCTTTGGAAGGATCTGAAATGTCTGAATTTGTGCTTTTCACTTCTCGCACTTCACATAAAGCCACAGCGAAGGTGTTTAAAGATCAGATTCTCTGATGGCTTTTTCATATATTTGCCTTTTATGTTCCCAGTTGATGAATTCACTTTAGAAGTACAATAAAAGCAGACTGATGATAATAAAACAAGCTTTCTATTaaaggatgttttttttaatgatagtCCCTTTTCACACGCTCGCTTTTGTGAACTTGTGATGTACAGGAGATTGTAAGTGATTCAGTGCTCCAGTGTACTCACAAtgagtcattcatttttattcggcttagttccttatttatcaggggtcaccacagcggaatgaaccgccaactattccgtcatcatgtgttttacagagcggatgcccttcctttATCTTGCCAtaactaataaaaatacttttccaTCTG

Function

symbol description
zgc:162816 Predicted to enable D-serine ammonia-lyase activity. Predicted to be involved in D-serine catabolic process.

GO:

id name namespace
GO:0036088 D-serine catabolic process biological_process
GO:0005575 cellular_component cellular_component
GO:0008721 D-serine ammonia-lyase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070410-94 Predicted to enable D-serine ammonia-lyase activity. Predicted to be involved in D-serine catabolic process.

Ensembl:

ensembl_id ENSDARG00000070416

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006965 False 1770 mRNA 0.49 8 31609481 31621367
TCONS_00006966 True 1984 mRNA 0.46 8 31609481 31621674

Neighbor

gene id symbol gene type direction distance location
XLOC_003559 egln1b coding upstream 5789 31558006 ~ 31603692 (+)
XLOC_003558 sipa1l2 coding upstream 135499 31323746 ~ 31473982 (+)
XLOC_003557 NA coding upstream 288942 31284984 ~ 31320539 (+)
XLOC_003556 trmt1 coding upstream 351125 31236001 ~ 31258356 (+)
XLOC_003554 NA coding upstream 396712 31204986 ~ 31212769 (+)
XLOC_003561 NA coding downstream 3497 31625171 ~ 31671413 (+)
XLOC_003562 diaph3 coding downstream 58839 31680513 ~ 32155212 (+)
XLOC_003563 AL844172.1 coding downstream 218394 31840068 ~ 31840189 (+)
XLOC_003564 CR556714.1 coding downstream 301437 31923111 ~ 31923225 (+)
XLOC_003565 CR556714.2 coding downstream 364254 31985928 ~ 31986044 (+)
XLOC_003369 CR854846.2 misc upstream 15486399 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 18897485 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 18915218 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 18923882 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 18929453 12679732 ~ 12680028 (+)
XLOC_003555 NA non-coding upstream 399594 31205483 ~ 31209887 (+)
XLOC_003551 CR855274.2 non-coding upstream 554193 31047854 ~ 31055288 (+)
XLOC_003550 CR855274.1 non-coding upstream 634589 30974771 ~ 30974892 (+)
XLOC_003566 CABZ01011390.1 non-coding downstream 570083 32191757 ~ 32191871 (+)

Expression


Co-expression Network