RNA id: TCONS_00006991


Basic Information

Item Value
RNA id TCONS_00006991
length 5066
RNA type mRNA
GC content 0.49
exon number 24
gene id XLOC_003575
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 33312576 ~ 33558093 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGATCAGTCCTTCAGAGGGATCTGAGGAAACGGCGGGAGGCGCGCGCTCATTTGTGGCTGCACCTCATTGTGGCGGGAGTCTTAACGCTTCCTGCACGAGACTAAACGGCTTTTAATCTAACTGTTTTAACGGTCGGAGGTTCCTCAGAAGAGTGAAGCGGAGTACTTTTCCCAAACATGAGATTCCTGAGCAGCATCGGAATGTTCGTCCTCACGACACTGAGCGCATTAACTTCTGTTTTATCGGCGAGTAACTATTACTGTGAAGAGCCGCTGTTGACATCACTACCCACATCTTCCTTCAGGAACTCATCAAAATACTCTGACAGAAGGTCACCGCACTACGCTAAACTCAACAGAAGAGATGGAGGTGGGGGGTGGTCTCCGAGCGGAGAAGACCAGCAACCTTGGCTTCAGCTGGACCTACGGGATAGGTTGAAGGTCACATCCATTGCCACCCAGGGTCGCTGGGGCAGCTCTGACTGGGTGGCTCGGTACCAGCTACACTACAGTGACTCTGGACGAACCTGGAGACCGTATAGACAAGAGGACGTGATATGGACATTTACAGGAAACAGTGACACAGACACAGTGGTCCAACACAAACTCCCTCACTCAATCAGAACTCGATATATGCGTCTTCTGCCCATAGAGGGAAGCCCGAGAGGAGGAATGGGTCTACGGCTAGAGGTCTATGGCTGTACATATAAGTCCGACGTGGCTGACTTTGACGGTCGCAGTGCCTTACTCTACCGGTTCAACCAGAAGTCCACCAGCACAGTGAAAGACGTTATATCTCTGAGATTCAGGAGTCATCAGGCAGAAGGCGTTCTGGTTCATGGAGAGGGACAGAGAGGAGATTTTCTGACTCTGGAGCTTCAGAGAGGAAGACTCATTTTGCATCTCAATTTAGATGATGCCAAGCCCCAGTCTGGTGGTCGCTCATCATCTGTCATGTTAGGAAGTCTGCTGGATGACCACCACTGGCATTCTGTTCAGATTGAGCGCTTTAACAAACACGTCAACTTTACCGTGGATGGACACACTCAACACTTCCGTAGTCTAGGACAAGAGGACACCCTGGAGATCGACTATGAGCTCAGTTTCGGGGGAATACCTTTGCCTGGCAAACCTGGGACGTTTCTTCATGAAAATTTCCATGGCTGCATAGAGAACCTCAACTACAACGGCGTCAATGTCATCGACATGGCAAAGAGACGAAAGCCACAGATTTATACCGTGGGCAACGTGACATTCTCCTGCTCGGAGTCCTCCTCAGTTGCAGTGACGTTCCTTAGTTCCACAGGCAGTTTCCTGGCGCTCCCTGCAGATTACAGTATGGATAGTCTTTCTGTTCGTCTTCAGTTCCGCACATGGAATCAGGAAGGGCTGCTGTTTTCAGTACCGCTCTCTCATGACCCAGACCCCATTAACCTGCTCCTGCGGCTCAGCCAGGCCCGGCTGCTCCTCTTGCTCTCTGGAGGACCACAAAACTCTGCTCAGGTTTTCAGCGGTCAGAATTTAAATGATGGACAGTGGCACTCCATATCCGTTGAGGTCAAAGGTGAGAAGGTGTCTTTAACAGTCAACAACCAAAAGCCTGCCACCATGGAAATCACTGGACGTAGCCAAACCCCCCAGAGAACAACCATCTACATTGGAGGCTGCCCTTTATTCCAGAGCAATTTCAACTGTGAGAACCCCGGCAGAGGATACCAGGGCTGCTTTCGTCTCCTTTTAATCAACAACCATCCGGTCAACTTCCTTCAGATCCAACAGGAAAACATGGGCAACTTTAGCCAGATTAGCTTTGATGTTTGCAACATACAAGATAGGTGTTTGCCCAATCTGTGTGAACATGGTGGTCAATGCATCCAGTCTTGGGACCAGTTTGACTGTAACTGTTCTGGAACAGGATACACAGGAGCCACCTGCCATAACTCAATATATGAGCGATCCTGCGAGGCCTTCAGGAAAACAGGAAGCCAGTCGAGTGTGTTTACAATCGACCTTGATGGGAGCGGACTTCTAGACCACGCTCAAGTCAACTGCACCGTGGCAGAAGATAAAGTTTGGACGGTGGTGGGGCACGATCACATGAGGCCCATTGACATTCGAGGATCCACTCCACGCAGCCCTTTCGTTCTTATCTTCAACTACACCATCTCGCCATACCATCTCCGCTCGCTCGTCACCTCCTCTGAACACTGCCAACAGGAAGTGATATATCGCTGCAGGAAGTCTCGGCTTTTTGACACTTGGGATGGAACTCCTCTGTCGTGGTGGTTGGATAGAGATGGAGTAAAGCGAACATATTGGGGTGGATTTCTACCTGGAGTCCAGCAGTGTTCTTGTAGCTTGGATGGCAACTGCAGGGATATGAATTATTTCTGTAACTGTGATGCAGACCAAGACACctgGGCAAATGATACTGGTGTGCTGTCTTACAAAGACCATTTACCTCTCAGTGAGATCGCCATTGGAGACACAAACCGGACAAACTCACAGGCCGAACTCCAAATTGGACCGCTGCGTTGCTATGGCAACCGATTTTTCTGGAACTCTGCATCTTTTTACCAGGAGTCCTCCTATCTGCATTTCCCAACCCTCCAAGCTGAACTGAGCATCGATATTTCACTCTTCTTCAAAACCAGTGCTTTCTCTGGAGTGTTCTTGGAGAATCTGGGTGTCAGAGACTTCGTAAGGCTGGAACTTAGTTCTCCCTCTACCATGAACTTCACCTTTGACCTTGGAGATGGACCAGTAACTCTTACTGTTCGGTCACCTGTAGCCTTGAATGACCGTCAGTGGCATTATATTCGTGCTGAGAGAAATGTGAAAGAAGCTTCTCTACAGGTTGACTCACTGCCGCTGGAACTAACCGAAGCGCCGCCTGAGAAACCATATCGGCTTCAGCTCAGCAGTCAACTCTTTGTAGGAGGAACGGCTTCAAGGCAGAGGGGCTTCGTGGGCTGCTTACGCGCTCTCACCATTAATGGGGTTACCCTTGACCTTTTCGAACGTGCAAAGACCACCCCGGGGGTGAATTCAGGCTGCCCGGGTCACTGCACCAGTGACAGCGTCTGCCATAATGGAGGACGATGTGTTGAAGAGCGCAGCAGTTACGCCTGTGACTGCACACAAACAGCCTTCGATGGGCCACACTGCAGAAAAGCTCTTGCAGCTTCTTTTGAAAGTGGGTCTTCAGTCCTGTATACTCTCCAGGAGCCATTTTCTGGGATACTAAACGAGGAAGCCAGAAGATCGCCGGCTGGTTTCCATGATGCAGAAGTTGCCAAGTCTCAAGAGAAAGTGTCATTTGGGTTCTTGACGCGTCACGTGCCAGCCTTGATCCTGATGGCTCACACTCTGGACCAGAACTACATGGCTGTTATGCTCACATCAAACGGCAGCCTGCAAATACGATActtgatgaataaagaaaaaaggaCTGAGATGTTCAGCCCAAAGTCAGGCAGTCTAGCAGACGGACGCTTCCACTGGGTCAAAATCAATCGAAAAGGACAGGAGCTCCTTGTTCAGATTGACAACACAATAACCCAGCAGTACAGCCTGTCTCCTGGCTCTGCTCTCAGCCCGGTGAGGTCGGTGATTTTGGGGAGAATCCAAGGTAGTGACATCACCGATAAGGAACTGGTCCAGGCTGGATTGAGAGGGTTTATTGGCTGCTTGTCCTCTGTTCAGTTTAATCAGGCAACCCCTCTGAAGGCAGCCTTGCAAAACAGCCCTTTAGTTACTGTTATCGGCCATCTGGAGGCATCAAGTTGTGGAACGATATCCAGCCCAAACACTTTAAGCGATACACACATACGTTCAGGTAAATCATCCTTTAAAATGACTCTGCAAAATCCGACAGAGGCAAAGACCCACCGAAAAAGGCAGATCAGAATGACTTGGCACTAATCGGAGGAGTAGTGGCCGCAGTGGTGTTCATCACACTCTGTGCACTGGCCTTCATCATCCGCTTCCTATACCGACACCGACGGACTCCAGCGCCTTCCGGAATCACCGGAAAGATGCATCGCCCCAGCATTGAGCCTCCACCTTATCGAGCTGCACTGGACCTGCACAAACCCCACCATGACAGCAAAGAATACTACATCTGACCTCTTCATGTCAAGCTTGGTCTTTAATCGAACAGCCGGTCACCAGTGTACATGCTAACAACCCCACCGCACTGTATTACCTACACTGCAGGCTGAGCAGCCAATCAGAGGCCGGCAATGTCTCCACAGTCTGGGGCACAAGAAACTACAACTCGAGAcgttttgtttatttgcttattttctaCAAAGAGGGTAAAGCTTACATGAAAGTGCTGTGTGCCAGCCGTCTGGAAGGTGTCAGAGCtgtatattgttattttacaggCATAATAATAGGTTATACATGCACAGCGCACACACTTTCCAGGCAAACAGCGCAGCAGGAGGCCTGAAGCATCACTGAATTGTCTTTATCCAGTGTGCCTGCTCAAACCTGTCTGTCTCAGAGCCCGGGCTTAAGCTAATGGACTGAAACCCCAGCGGATTGGATTCTGAGAGAATGCTTTTTGTGGTAGGGCGGTGGACCTTCCCAGACGTTGTTTTTAAAGGATCGATCATCGCTCAACATGTCCACAAAAACAAAAGATTAAAGACGTCCGCATCCGACAGCCTCACATTTTGATGTTGAAACTATTGACTGGTGCAGAGGCTGGGATTAATCACCAAAGGACCATAAGAATATATCAGCAGCGGCTGAGGGATTGAATATGAGTCATTTGTGTGTATCCAGATTCCCATGGGCTGGCCAGATTCAGGCAGTTTAATTCTCTTTCCCATCGTAATCGAGCCGGTCTCGCAACTGGAGCGAAATCTGTCCTTACTGAAGTGCATTATATCTCGTGACTagatcaacaacaacaaacttgCTTTCTATTGAGAATGAATTGTAtggctgtttttcttttctaTATGAATACTGTAAATGAACGGTGTACATACATttcataattatatttaataaatggaGCTTTCTCAGAGCTTATGAGTGCAGATGACCTA

Function

GO:

id name namespace
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0065008 regulation of biological quality biological_process
GO:0051179 localization biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0051234 establishment of localization biological_process
GO:0099177 regulation of trans-synaptic signaling biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0098655 cation transmembrane transport biological_process
GO:0098660 inorganic ion transmembrane transport biological_process
GO:0098662 inorganic cation transmembrane transport biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0055085 transmembrane transport biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:0009449 gamma-aminobutyric acid biosynthetic process biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0006810 transport biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process
GO:0050804 modulation of chemical synaptic transmission biological_process
GO:0050806 positive regulation of synaptic transmission biological_process
GO:0050808 synapse organization biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0031226 intrinsic component of plasma membrane cellular_component
GO:0030672 synaptic vesicle membrane cellular_component
GO:0097060 synaptic membrane cellular_component
GO:0042995 cell projection cellular_component
GO:0043005 neuron projection cellular_component
GO:0030424 axon cellular_component
GO:0098590 plasma membrane region cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0044459 obsolete plasma membrane part cellular_component
GO:0098878 neurotransmitter receptor complex cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0017146 NMDA selective glutamate receptor complex cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0071944 cell periphery cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0098984 neuron to neuron synapse cellular_component
GO:0044309 neuron spine cellular_component
GO:0008328 ionotropic glutamate receptor complex cellular_component
GO:0099572 postsynaptic specialization cellular_component
GO:0014069 postsynaptic density cellular_component
GO:0043197 dendritic spine cellular_component
GO:0098794 postsynapse cellular_component
GO:0032279 asymmetric synapse cellular_component
GO:0022804 active transmembrane transporter activity molecular_function
GO:0022834 ligand-gated channel activity molecular_function
GO:0046873 metal ion transmembrane transporter activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0015276 ligand-gated ion channel activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015291 secondary active transmembrane transporter activity molecular_function
GO:0015293 symporter activity molecular_function
GO:0015294 solute molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function
GO:0005215 transporter activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function
GO:0004351 glutamate decarboxylase activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0004970 ionotropic glutamate receptor activity molecular_function
GO:0004972 NMDA glutamate receptor activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0008066 glutamate receptor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-140106-102 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CNTNAP5 (contactin associated protein family member 5).

Ensembl:

ensembl_id ENSDART00000163106

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008641 lncRNA upstream 84266 33312576 ~ 33342244 (+) False XLOC_003575
TCONS_00008410 lncRNA upstream 96752 33312693 ~ 33329758 (+) False XLOC_003575
TCONS_00008640 lncRNA upstream 201765 33218729 ~ 33224745 (+) True XLOC_003573
TCONS_00006986 lncRNA upstream 250829 33172345 ~ 33175681 (+) True XLOC_003572
TCONS_00006984 lncRNA upstream 251192 33172336 ~ 33175318 (+) False XLOC_003572
TCONS_00008642 lncRNA downstream 289417 33844208 ~ 33850289 (+) True XLOC_003579
TCONS_00008645 lncRNA downstream 842776 34397567 ~ 34402807 (+) False XLOC_003581
TCONS_00008646 lncRNA downstream 842776 34397567 ~ 34402807 (+) False XLOC_003581
TCONS_00008644 lncRNA downstream 842776 34397567 ~ 34402807 (+) False XLOC_003581
TCONS_00008643 lncRNA downstream 842776 34397567 ~ 34402807 (+) True XLOC_003581
TCONS_00006987 mRNA upstream 134612 33284837 ~ 33291898 (+) False XLOC_003574
TCONS_00006988 mRNA upstream 135120 33284918 ~ 33291390 (+) True XLOC_003574
TCONS_00006973 mRNA upstream 1271298 31864921 ~ 32155212 (+) True XLOC_003562
TCONS_00006969 mRNA upstream 1361476 31680513 ~ 32065034 (+) False XLOC_003562
TCONS_00006993 mRNA downstream 73313 33628104 ~ 33772872 (+) True XLOC_003577
TCONS_00006994 mRNA downstream 263388 33818179 ~ 33842715 (+) False XLOC_003578
TCONS_00006997 mRNA downstream 680581 34235372 ~ 34237802 (+) True XLOC_003580
TCONS_00006998 mRNA downstream 967763 34522554 ~ 34537304 (+) False XLOC_003582
TCONS_00006999 mRNA downstream 968341 34523132 ~ 34537126 (+) True XLOC_003582
TCONS_00006982 other upstream 829922 32596473 ~ 32596588 (+) True XLOC_003570
TCONS_00006976 other upstream 1234639 32191757 ~ 32191871 (+) True XLOC_003566
TCONS_00006975 other upstream 1440466 31985928 ~ 31986044 (+) True XLOC_003565
TCONS_00006974 other upstream 1503285 31923111 ~ 31923225 (+) True XLOC_003564
TCONS_00006972 other upstream 1586321 31840068 ~ 31840189 (+) True XLOC_003563
TCONS_00006995 other downstream 263398 33818189 ~ 33827111 (+) True XLOC_003578
TCONS_00006996 other downstream 680565 34235356 ~ 34237091 (+) False XLOC_003580
TCONS_00007005 other downstream 1493851 35048642 ~ 35055532 (+) False XLOC_003587
TCONS_00007007 other downstream 1538814 35093605 ~ 35093722 (+) True XLOC_003588
TCONS_00007020 other downstream 2800572 36355363 ~ 36369192 (+) True XLOC_003598

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_07492176_07535995.mRNA True 7059 mRNA 0.46 27 CI01000306 7490293 ~ 7536956 (+)