XLOC_003577 (thsd7bb)


Basic Information

Item Value
gene id XLOC_003577
gene name thsd7bb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 33628104 ~ 33772872 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006993
ctGCCAGTGTCcgtacaccacacacacacaatcccagCTCTCCGTCTCTCTGCCACTTTATCTTCAGCAAGGGCTGCCCACTGGGATAATATTCTCTATCTGTCTTTCACGCGCATTAATcagtcattctctctctctctcttttactccTCCTCATTATTTGACACTTTTTCTCCATCCTCCTTTCTGCCATCCTCTTTCTTCACCTCCCTGTCCTCCTCCTTTATCACTTCCATTCTGCCGCTCTCTTCTTCTCACCGGCTGGAGAACTCACAGGAAGCTGGACCACAGACTGGTTTGATTCCAACAGGCTGACCAAAGATGGCATTTCTGAAAGAGGAGATTACCTTTGTCTTCTCCCTGTGGGCTTCCCTCCTTTATGTAGCACTAATGTCTCTTTCCCTGGGAGCAGAGGCACCTAAAAGAAGCCAGTTCATGTGGAAAACAGGTGTATGGGGTGTGTGTGTGGCCAGTGACTGTGGTTCGCTCGGCCTCCAGACTCGCTCAGTGTGGTGTGTCCATGCTGAAGGCTGGAGCACACATCAGTCCAACTGCTTTCCATCCGATCGCCCTGCGcatcagagagtgtgtgtgaagatGTGCGAGTGGCAAAAGGATCTGTTTGAGTGGCGCTTGTCTCCATGGGGCCCCTGCACTCCGAGTCCTCTCCTCCCAGCCAATCGATGCGTAACCGCTCAACGTGGAGTGCAGAGCCGCAATATGCAGTGTGTGAAGCGTAATAACAACTCCTCGGTGAGCCTACATGTGTGTGAAGCGTTTTCTTCAGCTCCAGAAGGAGAGCAGGCCTGTCTGTTACCTTGTCCGATGGATTGTGTCGTCTCCGCTTTCACCCACTGGTCCACTTGTAGCCGTACATGTGGGTCGGCTCTTCAACAGCGCACACGGGATGTCCTGGCCACACCCCTGTATGGAGGCATGGACTGCCCCAGTTTGACTCAGACACGCCCCTGTAGACATGAGCAAGGCCACCCCGCCCTCTGTCCTTCTGACCAACAGGAATACAGCTACAGTTTGTGGGCGGGGCCTTGGAGCCCTTGCAGAATTAAAGGGGTGGCACCTGTTGGGAAAACAACAGTGGATTTTAATTTGGGGAAAAGTACAGTCAGGACTTCCTATACAATAAAGCGGCACGCGGAAGGTTTTCATCGTCAAAATCATTACGATGAAAAAGGCTACAAAGTGTCCTGGGAGATCATCATTGGGTACCAGACTAGGCAGCTTCGCTGTTTGAGGAGCGACGGGAAGAACGCTATGCTGAGCCTTTGTGACCATGATAACAGCGCAGTGAACTTTCGCTCGTGCGTGATGCCCAGAGACTGTAAAGTGTCTGATTGGTCTCAGTGGAGTCTGTGTTCAAAGACCTGCCGCACATCTGACCCTTCGCCGGGCTTCAGGCACAGGAGCCGCAGCCTCATACAAGCAGCCATTGGTGGAGCAGAGCCGTGCCCCGTCCTGGAGGAAAAAGCAAACTGTAATATTTTGGAAGACGCACTACCGCTGTGCCCAAGGTATGAGTGGAGAGTCACCAGCTGGAACCCGTGCCAGGTGACTCCGCTTTTGAGTCAGCAGGACCATCGCCGTACCAATACCAGTGTCCTGTGTGGAGGTGGCATGAGGACCCGAGAGGCGTATTGTGTCCAGATTCAGGACAACACAGTGCCTTCTCATAGTAAGAACACTGGTTTCGATAAACCCAGTCGGCCTGTTGGGAAGAACTTGTGCACAGGGCCTTTGCCGCCATTGGCTGAGTTTTGCTTCATTCCCTGTCAGAAACATTGTCCCCTCACGCCTTGGTCGCCCTGGGGGCCCTGTCTCCATGACAACTGTTTGGAGCCTCAGGGGAGAAGAGGTTTCAAGATTAGAAGTCGTTCTGTAATTACGGAGTCTTGGGTCGAGTCTGACAGTTGCCCTCACGTCAGCGAAGCAATGACCTGCGATGACCCCGTCTGCTTCCTGTGGCGAGTGGCATCACTGGGGCCTTGTCTTCCTCTAAACGGATCATGTGGCCCAGGATTACAGGAGCAGACTCTGGAGTGTGTGTCTGCCTCAGGTGAGCCGGTCTCTAATGATCAGTGTCCAGAAGATCCTCCTGCGGTCCAGCGGTTATGTGAGATGCCCTGTCCTGGAGACTGTGTGCTCGGACACTGGGGGTTCTGGACCTCCTGTTCCcagtcctgctccagtaaacacCAAGAGGGGAAACAAAGTCGCTCACGTCTGGTTCTGGCTCTTCCTGGAGATTATGGAAAGCCGTGTCCTCCGGGCTCTGAGCTGGAGCAGTGGAGATCCTGCGGGGCACACTCGTGCACCGTCTACCACTGGGACGCTTCACCCTGGGATCCCTGCATGCCAAACACCATCACAGACAAGACTGAAAGAAACAGAACAGTCCAGATGGAGGATGACAGCACCTGCGGGACGGGGCTACAGACGCGCCAAGTCATATGCAGGAGGGCTGGGAATGGACATGTGCTGCCAAAACGATGTCCTGAGTCCTCTCGTCCAGACTCAGTACGGTCCTGTCCATTACCTTGCAAAGTTGACTGCATTGTTACAGCCTTTAGTGAATGGAGTGTCTGTCCCACTTCCTGTTTGTCAGTGAATGCTACTGTCTCAACCCAGTCCCGTCACAGGATTATCATCCAGAGACATGCTAACGGGGGCCAAGAGTGTCCAGATACTCTTTATGAAGAGAGGAACTGTGATCCACCTCCTCTGTGCCCAAcatacagATGGCAGACGCACCGCTGGCATCAGTGTGTTCTGGTACCCGATTCGGTGCGGCAGGCTGTTGGAGGACCCGCAGAGGCATGCGGCTCTGGCCTGGAGACAAGAGAGGTGACGTGTGTGGGTGCGGATGATGCTCCGGCAGAAATGGCCGAGTGTGTGAGCTGGGCAGGACTGATGCCCGTGTCAGTGAGGGAGTGTCGTGTGCCATGCAGAGATGAATGCAGCTTCACCTCCTGGAGCAGATTCAGTCAGTGTCGAGGCTGTGGAAGCTGGCGCACACGCACCCGATCTCTCATAGGTCGCAGTAAGAAGCGCTGGCGATGCCAACAGGAGGAGTTGTTTCCTCTGCTGGAGAAAGAAGCTTGTCCTTGTTCTGAATTTCACAGCAGGCCTCAGGGTCCCTGGTCTCCATGTTTACTCTCAGCAGTGAAGAGCACTGCTGGACGGCCTTTCATCCAAGGAGTTTTCCACCAAGGCCAGAAGGCAGTCCAGGACTGGCGAGGCCTTAGGAGGAGCAGCGAGTGTGGGCATGGGAGACGCTACAGAGCTCTGGTCTGTCTGGATCATCTGAGACAGCTGGTGGAGCCGGCGCTCTGCAGCAGCCCTGGTTATGAAGAGGAGTCGTGTCATGTGTCCTGCTCTACAGACTGTAAGCTGAGTGAATGGTCTCACTGGTCTGCCTGCAGCGCCTCCTGTGGTGGAGGTGTGAAAGTTCGCTCTCAGTGGCTGCGAGAAAAGCCCTTCAATGGAGGTCGACCCTGCCCAAAACTCAACTCCAAAAATCAGGTGTCTGAGGTACTGCCCTGTTACTCTGACTGCAGTCAGTATATTTGGGAAGTGCAATCCTGGTCTGTGTGCATCATAAATCCTCAGAATAACCTCACCAACATTAGACCAAACCATCAGCCTGTCTGTGGAGAGGGTTTCCGGACCTCCAAAATCCGCTGCTTGAAAAGGGGCGGAGAGAACCAGGATGAGGTTGTTGATAATTCGCTGTGCGATCTGGAGGAACGACCAAGCACAGCTGAGACCTGCCTGCTGCCATGCCCCGCCCACTGTGTGACATCAGAGTGGAGCCAGTGGACCAGATGTAGTGTGGACTGTAACGATGGAGATTTGAGCTGGAGGAGCAGAAGTGTTTTGAGGTGGCCTGAAGAAGATCACACCTGTCCTGAACTCAACCAGACTAAACCCTGCACCAACATGGCATGTCTCAAATACTCCTACGTTTACTCAGactgGAGCAGCTGTCAGCTCAGTGAAAGCGCAGTGTGTGGCCGTGGGATTAAGACTCGACTCCTGAACTGTGTGCGCAGTGATGGGAAACTGGTGGAGCTCAGCCTGTGCAAAGAGTTGGGTCCTTCACGTGGAAAGCTCTCAGCCCCCTGTGAAGTGGCGTGTCCTGTTAATTGCCTGATTACTGAGTGGTCCGCCTGGTCTGAGTGCTCACACACCTGTGGAGGCCAAAGTCAGAGGTCTCGGTCGAGGGTAGTTCTGCAGGCAGATAGTGAAGGAGGTCGACCATGTCCATCTCAGCTCTCCCAAACTCGGCCTTGTCCTATCAGGCCCTGCTACAGCTGGACACTGGCAGACTGGAGCCCCTGCAGGGTTGAGgGCGCTGACTGTGGCGAAGGAGTAAGTCGCAGGGAAAGGTCATGTGTGCTGCACTGGGGTTCTCTTTCAGGTCCTCCTCAGCCCGTACCTGTAGAGGATGAGAAGTGTGTTGGACATTTACAGAGTAAAGTCAGTGAGATTGAGTttctgcagccctgcacagtccCTTGTCCAGGAGAGTGTCACCTGACCCAGTGGTCGCCGTGGAGCTCATGTCAGCTGATGTGTCTGGATGGGCGGAGCTTTGAGACATGGGGTCGTCAGGCTCGATCCAGAGCTGTGGTCACTCAGGTGCAGGAGAACCAGGAGTCCTGTCCCAGCCAGACATACGAGACACGGCCATGCCAAGGAGGAACGTGTCTTAGTTATGAATGGATGACTGGTGAATGGAGGCATAACCGCAGACTGGTGTGGTGTCAGCGCTCGGATGGAGTCAACGTCACCGGAGGCTGCATGGCTGTTAACCAACCGTCTGCGGTACGACAGTGTCAACCTCCCTGCACCAAACCCTTCTCCTTCTGCAcgcagAATGGAGTCTGCGGATGTGAGAAGGGCTTCACAGAGGTCATGACGTCTCACGGGTTCCTCGATTACTGCACCAGAACCCCAGGACTGGACCATAAGAAGGCAGATGTGAAGAGCACTGCAGGCCGACTGAGGCCAGATTACACTCGAAACAATAAACATGTTAAGGACTGGACTCTGCAGCCTCTCGGACCTGATGGGCGTGTAAAGCTGTGGGTATATGGATTGATGGCGGCCGGGTTTGTTGTGATCCTTCTCCTCATCGTAATGTCCTTCCTGCTGTGTAAAAACCCCGAGGACAGTCCCAGCAGCAGTCCACAGAAGGCTCTAGCTCTGGCGTATGATGGAGACATGGATATGTGAGTCCAGCATGTGTATGCAATCCTGAAACATGTCAAAACAAACGGCTGCTTTCCTTCAGGCCACAACATCAACGTTTACAGCAGCACACAAGCTGAGCCAGATGGAGAACTGATGTTTAAACAGCACAAAGACTGAAACAGAGGCTGTGCTGAAGAACTGCAGAGAGGACAAAACATCAACCGAATGTACCATagcgtgagtgagtgtgtgtctgtcagtctgtttgtgtgcgtgtgtgtgcaaaagccgatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttagtcatCCATTTTGTTAATTGTAATGACATTTTTCTGTATGTTAAAAGAACTGTTGACTTTTaaagattgttcacccaaaaatcaaaatgACCTCATCGTTTATTCTTCatc

Function

symbol description
thsd7bb Predicted to be involved in actin cytoskeleton reorganization. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human THSD7B (thrombospondin type 1 domain containing 7B).

GO:

id name namespace
GO:0031532 actin cytoskeleton reorganization biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-090708-2 Predicted to be involved in actin cytoskeleton reorganization. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human THSD7B (thrombospondin type 1 domain containing 7B).

Ensembl:

ensembl_id ENSDARG00000061497

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006993 True 5651 mRNA 0.53 28 33628104 33772872

Neighbor

gene id symbol gene type direction distance location
XLOC_003575 NA coding upstream 70011 33312576 ~ 33558093 (+)
XLOC_003576 BX119916.1 coding upstream 199112 33428874 ~ 33428992 (+)
XLOC_003574 nkpd1 coding upstream 336206 33284837 ~ 33291898 (+)
XLOC_003573 NA coding upstream 403359 33218729 ~ 33224745 (+)
XLOC_003572 BX530032.1 coding upstream 452423 33172336 ~ 33175681 (+)
XLOC_003578 spoplb coding downstream 45307 33818179 ~ 33842715 (+)
XLOC_003579 NA coding downstream 71336 33844208 ~ 33850289 (+)
XLOC_003580 fam43a coding downstream 462484 34235356 ~ 34237802 (+)
XLOC_003581 NA coding downstream 624695 34397567 ~ 34402807 (+)
XLOC_003582 zmat3 coding downstream 749682 34522554 ~ 34537304 (+)
XLOC_003369 CR854846.2 misc upstream 17505022 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 20916108 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 20933841 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 20942505 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 20948076 12679732 ~ 12680028 (+)
XLOC_003571 NA non-coding upstream 867936 32751641 ~ 32760168 (+)
XLOC_003583 NA non-coding downstream 778152 34551024 ~ 34560739 (+)
XLOC_003588 CT963136.1 non-coding downstream 1320733 35093605 ~ 35093722 (+)
XLOC_003590 NA non-coding downstream 1416851 35189723 ~ 35194538 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_07609108_07637728 NA coding CI01000306 null 7609108 ~ 7637836 (+)