XLOC_003574 (nkpd1)


Basic Information

Item Value
gene id XLOC_003574
gene name nkpd1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 33284837 ~ 33291898 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006987
AGTTCAGTCCACCTCAGTTAATGTTTACACACTCTTCCACTTTCTTTCTGCTCAGCCGCATCTGCTAAACCAAAGGCATTTTTCTTCTTTGTCTACATGAAATATATCTGGAAACGAAGAATGGATATTAGTTCACGAGCAATTTTGCTGTAAACAGTGCCTAGAGGATTGCTAGCTAATTCTACTCTGAAAAAAGGAAGGCTGGCGATGTAACTCAGTTTTGTGATTTATAAAGACTGATAAATACAGAACCGATGGCAATCGAAAAGGtgACGGATATTCCCTCTGATAATGTATATGCTTATGCATTATCAAAAACCCTCACCAAAGTCTCTTCTCCGGTGACGGTGGGTTTGTATTCAGAATGTCACAACAGGATCAACATGGTGCTCAAGAACATTGAGGTTCATATGAATCAAGAGGGCAAAAGAAGGGAAGAGAAATACACCAAAGAACCAAAGCCTCGCTCAGTTAAACCCTCCATCTCTAACCTCATCTCTGTGATCTTCCGGCTCCTCTTCTGTCGGCCTGTGTGGACGGAACAGAACCAGAACATGAAGAACGTTCGCTATATTTTTGTCAGGTTCAGTGCATGGCATTTTGCAGGAAGTGACCTGCTTTGGGCTGGACTGGTAATGCAGTTGAGCAAAGCTCTTCAGCACAGCTTTGGAAAGCTCCAGTTGGCTCTTTTCCGGATAGCCCAATATGATGAAGAGGAAGATGCAAAGAAGAAGATGATCGAGGATATTCCAAAGAACTGGAGATCCAAAAAGTTGGGATGCATTCCCATTTGGGCACTAATACTAATGATAATCATTGCATCGCTCCTTATTTTGGTTCCCCTCATCATATTTGGATTTTCATATCTGAAGGGCGACCAACAAAATGAGGAATCAAGCAGTTATGGTGTGATTGAAGGTTTTGCCATCACTGCACTTGGTGTTCCTGCTGTAGGAGCTCTACGATTTATAATATTACTGTTGAAGAACCTAATTCTCAACCAGGATCTGAAAATTAGACAAGGACTGGACAACAAGAAGGTAAGTGAGCAGCTGGGACTAATGCATGAAGTTCGGAAGGAGATGAGGCTTCTGTGCTGCTTCATTTTCTTTATGGAGATCTTTGAAAGAAGGAGGATCAGGGTAGTGCTGGAGATCACCAACTTGGACCGCTGTACGCCAAAGAAAATTGTAGGGGTTTTGGACGCCATTAACATCCTCCTATCTGATGACGAGAGCCCCTTCATTTCTGTGCTTGCTGTTGATCCGGAAGTTCTTGTTAGGCAGGTCCAACAGGCAGAAGATTGCTTAAGGAAGAGAAACACTGCATACGACTTTCTAGACCGTATAATCACATTGCCTTTCACTGTACCTCCGCTTTCAGATTCATCAAAGTCAAGTGTCTTTGAAAACATTGTTCGTGGTCAATCAGAGATCCCTGAAGAGATTCCTCTTGAGACTGGAGCATCTACTTTTAAAGGTCCTGGGACATCATTTTCTGTTGAAGATGAGTATTCTGTAAGGTTCGATGAGACTAAAGAAGAACAAGAGATTCCTTTAATTggaaaaaaagcaaacaatgaaACATTTGCTGTAGCAGAACTTAATCTAGAAGACGTAGACAGGTTTATCGAATCTGCATTTACCTTCATATTTTCAAGAGATACAAGCaaacttaataaatatttgtCTGGAGACACTATGTCCATGAGACGAGTGATCAACTCCATTAGAGTAACTATCATGATCATGGAGATCCGAAAATTGGAGCCTCCACATCCTGAGAAAATTGCAGCATGGATTGTTTTGTTGGATCGCTGGCCTTGCAGAGTGAGTTGGATTCTTCAATGCGTTGAAGATGACCAACAGAGTTATGAAATAGATGATTCATCCTGTGCTGCCGATGCTACCAAGACAATATGGGAAGTGTTCAATTACAACAGTCTGGAGCTCTGCATGATTGAACATGCAGTGGAGAACTTTCTGGAAAGAGATGGGGACCCTGAGCTTTTTGAGATTTTCCTTAGGAAAGACTTCAAGTTCACTGTTAGGGAGCTGGAAATGTTTAAGCTCTGCACAGTGAACCTAAACTACTCCATCAAGAAGGAGTTGGCCAGGGTCCGTGGGAGACGCAGACTGAGGAGAGCAGGGAGAAATGCTTTCCAATCCATCTCATCACGAACTCTAATGAACATGAACCCCGAAGATATCTGTCAAgagATGACAAAACTAAGCCTCCCAGAGAAATACCTCGAAACGGTAAGGACAAATTTCATAGATGGCAGAACAATCCTCTTCGGTGACCCCAAAGACCTCAGGCAAGTCCTGCAAATGACTCTGGGTGAATGGATGACTTTTAAATTTCATTTCCTTGGGGTCACACCTTCTAGTCGACCGGCTCAACCACAAAGTCATCTAGCCGCCACAAACCCTGGAGTGGTCATATGCCCATCTGGCCATGGCCGGTAAGCAGGATAACTGACCTTGAGGTTTGCATCGTTGCATTTTCCTCATGTGTATGCTTTCAGTGGACTATGATTGTTTCAGGAAACAATACTGCATCCCTACATAAATATAATTCCCTTACGGCAGAGCGAAAAAACAAGACTGTAAATGTACACCAGTGAATCAGACTGCTCAACAAAAGTGCTACTTGAAAACAGCTTTGTTATTCAGAAAAATCTTTTAGCATTCAAACAGATCAAATTTGTTAGATGCATTATTTATAATGGGAACAAGACATTTCATTTCTTTTAAGCATTAGGAAGATTTTCAAATGGTTCTTAATGAAACTGAACATCATTTCTGCATGAATAAAAGCAACcagtttattcttttttattattatttttttaactgtgcagcaTAGAGGGTAATACAATATACAAGCTTGCTGGATTTTAATTGTTGTATTGATTCTATACGTTGAATGATTTTACAAACCATGTAAAATGTTGATCAAAAACATGGAAAACTCTTTCCTCAAACATACATACCTGAGAAACTGAAGGTCAAATGATAACCTGATAATGTCAATACTGTCTGGCTATTAAAGGCGCTGTATGTAAGTTTTCGACTCatctaaagcatacaaataccaCAATATagttgcagatatttaagaaacatgctaaatgaacattcttgtttatctgaaaaacaatgctaaaggcAGAAATTCTGCTTTGTAAATGTGAGTTGCAGTACGTACAGGAacgctgtttttgttttgataattttaacTCATCCACTGCCACATTAGCCAATTATATGTCAGCACCCCGAGTTACGC
>TCONS_00006988
TTCTTCTTTGTCTACATGAAATATATCTGGAAACGAAGAATGGATATTAGTTCACGAGCAATTTTGCTGTAAACAGTGCCTAGAGGATTGCTAGCTAATTCTACTCTGAAAAAAGGCTGGCGATGTAACTCAGTTTTGTGATTTATAAAGACTGATAAATACAGAACCGATGGCAATCGAAAAGGtgACGGATATTCCCTCTGATAATGTATATGCTTATGCATTATCAAAAACCCTCACCAAAGTCTCTTCTCCGGTGACGGTGGGTTTGTATTCAGAATGTCACAACAGGATCAACATGGTGCTCAAGAACATTGAGGTTCATATGAATCAAGAGGGCAAAAGAAGGGAAGAGAAATACACCAAAGAACCAAAGCCTCGCTCAGTTAAACCCTCCATCTCTAACCTCATCTCTGTGATCTTCCGGCTCCTCTTCTGTCGGCCTGTGTGGACGGAACAGAACCAGAACATGAAGAACGTTCGCTATATTTTTGTCAGGTTCAGTGCATGGCATTTTGCAGGAAGTGACCTGCTTTGGGCTGGACTGGTAATGCAGTTGAGCAAAGCTCTTCAGCACAGCTTTGGAAAGCTCCAGTTGGCTCTTTTCCGGATAGCCCAATATGATGAAGAGGAAGATGCAAAGAAGAAGATGATCGAGGATATTCCAAAGAACTGGAGATCCAAAAAGTTGGGATGCATTCCCATTTGGGCACTAATACTAATGATAATCATTGCATCGCTCCTTATTTTGGTTCCCCTCATCATATTTGGATTTTCATATCTGAAGGGCGACCAACAAAATGAGGAATCAAGCAGTTATGGTGTGATTGAAGGTTTTGCCATCACTGCACTTGGTGTTCCTGCTGTAGGAGCTCTACGATTTATAATATTACTGTTGAAGAACCTAATTCTCAACCAGGATCTGAAAATTAGACAAGGACTGGACAACAAGAAGGTAAGTGAGCAGCTGGGACTAATGCATGAAGTTCGGAAGGAGATGAGGCTTCTGTGCTGCTTCATTTTCTTTATGGAGATCTTTGAAAGAAGGAGGATCAGGGTAGTGCTGGAGATCACCAACTTGGACCGCTGTACGCCAAAGAAAATTGTAGGGGTTTTGGACGCCATTAACATCCTCCTATCTGATGACGAGAGCCCCTTCATTTCTGTGCTTGCTGTTGATCCGGAAGTTCTTGTTAGGCAGGTCCAACAGGCAGAAGATTGCTTAAGGAAGAGAAACACTGCATACGACTTTCTAGACCGTATAATCACATTGCCTTTCACTGTACCTCCGCTTTCAGATTCATCAAAGTCAAGTGTCTTTGAAAACATTGTTCGTGGTCAATCAGAGATCCCTGAAGAGATTCCTCTTGAGACTGGAGCATCTACTTTTAAAGGTCCTGGGACATCATTTTCTGTTGAAGATGAGTATTCTGTAAGGTTCGATGAGACTAAAGAAGAACAAGAGATTCCTTTAATTggaaaaaaagcaaacaatgaaACATTTGCTGTAGCAGAACTTAATCTAGAAGACGTAGACAGGTTTATCGAATCTGCATTTACCTTCATATTTTCAAGAGATACAAGCaaacttaataaatatttgtCTGGAGACACTATGTCCATGAGACGAGTGATCAACTCCATTAGAGTAACTATCATGATCATGGAGATCCGAAAATTGGAGCCTCCACATCCTGAGAAAATTGCAGCATGGATTGTTTTGTTGGATCGCTGGCCTTGCAGAGTGAGTTGGATTCTTCAATGCGTTGAAGATGACCAACAGAGTTATGAAATAGATGATTCATCCTGTGCTGCCGATGCTACCAAGACAATATGGGAAGTGTTCAATTACAACAGTCTGGAGCTCTGCATGATTGAACATGCAGTGGAGAACTTTCTGGAAAGAGATGGGGACCCTGAGCTTTTTGAGATTTTCCTTAGGAAAGACTTCAAGTTCACTGTTAGGGAGCTGGAAATGTTTAAGCTCTGCACAGTGAACCTAAACTACTCCATCAAGAAGGAGTTGGCCAGGGTCCGTGGGAGACGCAGACTGAGGAGAGCAGGGAGAAATGCTTTCCAATCCATCTCATCACGAACTCTAATGAACATGAACCCCGAAGATATCTGTCAAgagATGACAAAACTAAGCCTCCCAGAGAAATACCTCGAAACGGTAAGGACAAATTTCATAGATGGCAGAACAATCCTCTTCGGTGACCCCAAAGACCTCAGGCAAGTCCTGCAAATGACTCTGGGTGAATGGATGACTTTTAAATTTCATTTCCTTGGGGTCACACCTTCTAGTCGACCGGCTCAACCACAAAGTCATCTAGCCGCCACAAACCCTGGAGTGGTCATATGCCCATCTGGCCATGGCCGGTAAGCAGGATAACTGACCTTGAGGTTTGCATCGTTGCATTTTCCTCATGTGTATGCTTTCAGTGGACTATGATTGTTTCAGGAAACAATACTGCATCCCTACATAAATATAATTCCCTTACGGCAGAGCGAAAAAACAAGACTGTAAATGTACACCAGTGAATCAGACTGCTCAACAAAAGTGCTACTTGAAAACAGCTTTGTTATTCAGAAAAATCTTTTAGCATTCAAACAGATCAAATTTGTTAGATGCATTATTTATAATGGGAACAAGACATTTCATTTCTTTTAAGCATTAGGAAGATTTTCAAATGGTTCT

Function

symbol description
nkpd1 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human NKPD1 (NTPase KAP family P-loop domain containing 1).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-141215-19 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human NKPD1 (NTPase KAP family P-loop domain containing 1).

Ensembl:

ensembl_id ENSDARG00000075698

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006987 False 3291 mRNA 0.40 5 33284837 33291898
TCONS_00006988 True 2698 mRNA 0.42 5 33284918 33291390

Neighbor

gene id symbol gene type direction distance location
XLOC_003573 NA coding upstream 60092 33218729 ~ 33224745 (+)
XLOC_003572 BX530032.1 coding upstream 109156 33172336 ~ 33175681 (+)
XLOC_003571 NA coding upstream 524669 32751641 ~ 32760168 (+)
XLOC_003570 CR589875.3 coding upstream 688249 32596473 ~ 32596588 (+)
XLOC_003569 CR589875.2 coding upstream 774542 32505375 ~ 32510295 (+)
XLOC_003575 NA coding downstream 20678 33312576 ~ 33558093 (+)
XLOC_003576 BX119916.1 coding downstream 136976 33428874 ~ 33428992 (+)
XLOC_003577 thsd7bb coding downstream 336206 33628104 ~ 33772872 (+)
XLOC_003578 spoplb coding downstream 526281 33818179 ~ 33842715 (+)
XLOC_003579 NA coding downstream 552310 33844208 ~ 33850289 (+)
XLOC_003369 CR854846.2 misc upstream 17161755 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 20572841 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 20590574 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 20599238 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 20604809 12679732 ~ 12680028 (+)
XLOC_003581 NA non-coding downstream 1105669 34397567 ~ 34402807 (+)
XLOC_003583 NA non-coding downstream 1259126 34551024 ~ 34560739 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_07386318_07389827 NKPD1 coding CI01000306 null 7386318 ~ 7390040 (+)