XLOC_003572 (BX530032.1)


Basic Information

Item Value
gene id XLOC_003572
gene name BX530032.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 33172336 ~ 33175681 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006984
CCGCGTTTTTGAGTGAGTGTGGACGACGCTGGATCTTCTCACCGGCTGCCATGATCGAACAAACAGCAGAAATTAAGATCAAGGAGGAGCATCACAACAGTTTCGTTGAAGTAGACATTCTAGTATAAGCTTGATGAGTACACACCAGGTTTTGCAGCTAATGCATGCCAAAGGAGGAGCAGCTAGTTGCAAGATGCATCCTCTGCTGGACAGTTTaaatACACAGAACATTGAGGAAAAAAGAGATGCTGTTGTCTGCTGCCTCAGTAACTACCTTGGGGAAAGACAAGAAGATATGTTCCATGACTGGCAGGTATGTCATATTGATAACAGATTCTTAATCAACTCAAGTGATCCTCCTCTTATATCCCCCTTCTCCTTTTGTCTTCTTCTCTCCTCTGCTCTCCTTTAGATAAACTGAAATATATTGAAACagaatcttaaaataaaattgtgtttgctttttgtttgtttcattttaatgtagGAATGTGAGGAGTACACAGAAAAAACGATGAAGGAGATTGTGGAGCACAATTTGTCTATTGTGATCGGGGGAAAACAAGTGATGGAAGAATGGGGAAGCCAAACAGAGGCATGCATACTGCTGGGActcatatttttttctcttcaatcATTTGCttcacacacagacaaagacCCATCCACTGTCTCTCAGCCCTCTCCATTGCTCTGTGTTTTCCCCAATATTTCCTATACAGAAAAGGAATACTAATGGAAAGTGGCCTAAAGAATTTTGATCTCACCTACCGTCTTTTCTTCCccattggtttatttattttattctcatCCTATCTGCGAGAGTGAGAGTAAggacaaaaaataaagaattttgttttacttttatccGGATATTTGATACTGTACATGCACAAAA
>TCONS_00006985
GCGTTTTTGAGTGAGTGTGGACGACGCTGGATCTTCTCACCGGCTGCCATGATCGAACAAACAGCAGAAATTAAGTTTGAAACTGTCGCTGGCGTCACCGTGGCCCGGTACACACTAAGCCGACAGCAGGTGGAGCAACGTCGGCCACTCGGTCAGGCGAAGTCTGTATATGTGGACACTCACTATTTGCCCTCTCTACAGTTTCTCTTGTCTGTCCCCCACAAGCAGAGACCCACTGATAGACCGCTGTTACCAGTTCTAGGGCTGACACATCCGCACACGTCCACATCACAAGTGTATCCTGTAAAGATCAAGGAGGAGCATCACAACAGTTTCGTTGAAGTAGACATTCTAGTATAAGCTTGATGAGTACACACCAGGTTTTGCAGCTAATGCATGCCAAAGGAGGAGCAGCTAGTTGCAAGATGCATCCTCTGCTGGACAGTTTaaat
>TCONS_00006986
TGAGTGAGTGTGGACGACGCTGGATCTTCTCACCGGCTGCCATGATCGAACAAACAGCAGAAATTAAGGCAGAGTCTGTATATGTGGACACTCACTATTTGCCCTCTCTACAGTTTCTCTTGTCTGTCCCCCACAAGCAGAGACCCACTGATAGACCGCTGTTACCAGTTCTAGGGCTGACACATCCGCACACGTCCACATCACAAGTGTATCCTGTAAAGATCAAGGAGGAGCATCACAACAGTTTCGTTGAAGTAGACATTCTAGTATAAGCTTGATGAGTACACACCAGGTTTTGCAGCTAATGCATGCCAAAGGAGGAGCAGCTAGTTGCAAGATGCATCCTCTGCTGGACAGTTTaaatACACAGAACATTGAGGAAAAAAGAGATGCTGTTGTCTGCTGCCTCAGTAACTACCTTGGGGAAAGACAAGAAGATATGTTCCATGACTGGCAGGAATGTGAGGAGTACACAGAAAAAACGATGAAGGAGATTGTGGAGCACAATTTGTCTATTGTGATCGGGGGAAAACAAGTGATGGAAGAATGGGGAAGCCAAACAGAGGCATGCATACTGCTGGGActcatatttttttctcttcaatcATTTGCttcacacacagacaaagacCCATCCACTGTCTCTCAGCCCTCTCCATTGCTCTGTGTTTTCCCCAATATTTCCTATACAGAAAAGGAATACTAATGGAAAGTGGCCTAAAGAATTTTGATCTCACCTACCGTCTTTTCTTCCccattggtttatttattttattctcatCCTATCTGCGAGAGTGAGAGTAAggacaaaaaataaagaattttgttttacttttatccGGATATTTGATACTGTACATGCACAAAAACAACcacaagtctgtgtgtgtgcttttggcTTTTAAAATAGAATAAGTGACCTTTGAAGTTTTGTATGCAAGTAGCCAATTACCagaaaaaacttttgaaaatgagTATAGTGAGTTATAAAACAgggtttatttgttcattgttgtGTGAAGCTGTTGTACTTTATTTAGCACTCTTTTCTGTGTTTTAATAATTTGGTGTCCTAAAACaggtatatgttttattattcaacATTGACACATTTGATAGATCAgtgagttataaaacaggtatatACTTGAAATGTTGTGTAAAGCTGTTGTGCTGCACTATATTTTGAGTgtgttttaggattttttttaataaaacattaagttGATAA

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0006396 RNA processing biological_process
GO:0030490 maturation of SSU-rRNA biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0000469 cleavage involved in rRNA processing biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0000478 endonucleolytic cleavage involved in rRNA processing biological_process
GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0048641 regulation of skeletal muscle tissue development biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0090501 RNA phosphodiester bond hydrolysis biological_process
GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic biological_process
GO:0030684 preribosome cellular_component
GO:0030686 90S preribosome cellular_component
GO:0032040 small-subunit processome cellular_component
GO:0030688 preribosome, small subunit precursor cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044452 obsolete nucleolar part cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000101617

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006984 False 898 lncRNA 0.40 3 33172336 33175318
TCONS_00006985 False 452 lncRNA 0.50 4 33172338 33174332
TCONS_00006986 True 1231 lncRNA 0.39 5 33172345 33175681

Neighbor

gene id symbol gene type direction distance location
XLOC_003571 NA coding upstream 412168 32751641 ~ 32760168 (+)
XLOC_003570 CR589875.3 coding upstream 575748 32596473 ~ 32596588 (+)
XLOC_003569 CR589875.2 coding upstream 662041 32505375 ~ 32510295 (+)
XLOC_003568 CR589875.4 coding upstream 751798 32401204 ~ 32420538 (+)
XLOC_003567 NA coding upstream 944851 32223117 ~ 32227485 (+)
XLOC_003573 NA coding downstream 43048 33218729 ~ 33224745 (+)
XLOC_003574 nkpd1 coding downstream 109156 33284837 ~ 33291898 (+)
XLOC_003575 NA coding downstream 136895 33312576 ~ 33558093 (+)
XLOC_003576 BX119916.1 coding downstream 253193 33428874 ~ 33428992 (+)
XLOC_003577 thsd7bb coding downstream 452423 33628104 ~ 33772872 (+)
XLOC_003369 CR854846.2 misc upstream 17049254 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 20460340 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 20478073 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 20486737 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 20492308 12679732 ~ 12680028 (+)
XLOC_003579 NA non-coding downstream 668527 33844208 ~ 33850289 (+)
XLOC_003581 NA non-coding downstream 1221886 34397567 ~ 34402807 (+)

Expression


Co-expression Network