XLOC_003578 (spoplb)


Basic Information

Item Value
gene id XLOC_003578
gene name spoplb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 33818179 ~ 33842715 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006994
GTGCGCATGCGCAGTGCGCCTGCCTAGAGCTGAAGCGCAGGCAGCGCTATGAGAGACCGAGAGAGAAAAACACCCCTTATCTGTAGAGAAAGGCTCAAAAGTTCACTCGTTTCGCACAAAATTCTTTCTGCGACTCACTCAGGTCACATATCGTACCGTGTTTCTATGTCTGTGATGCGGAGTGTCTGAGAgGGTTCATCGAGTCTGCTGAGAGTGGCATCCCACAGAAGCACCCTCATCTGCCAAGCTCTCCTCTCTGGAAGGCTCGCAAAACTCCCCCAAGTGAGATTCAGCATTCTTACTGAGGATGGCTTGTTTAGAGGCTGAGCTCAGTATGTACTGTTAGTCATTGTTTCCAGTCACTGACGGCTGTGTCTCTGAGCTTGAGCACAGGGATGACATGGAAACACAACTTGCTGATCTCTGAAAACAAGGCCGAGCAGTAAGCTAAATCAGGGACGTGGAAGGGTGAAAGCAGGCCATGTCACGGGTTCCCACCCCCCCTCCACCGGGGGAAATGACATCCGGACCTGTGGCGGAGAGCTGGTGTTACACACAGGTGAAAGTTGTAAAATTTTCTTATATGTGGACGATTAACAACTTCAGCTTCTGTCGGGAGGAGATGGGAGAAGTCGTGAGGAGCTCAACCTTCTCTTCAGGCCCCAACGACAAGATGAAATGgtGTTTGCGAGTGAACCCAAAGGGTCTGGATGACGAGAGTAAAGATTACCTCTCACTGTATTTACTGCTTGTCAGCTGCCCAAAAAGCGAAGTAAGAGCAAAGTTCAAGTTTTCTTTACTGAACGCCAAAAGAGAAGAAACTAAAGCCATGGAAAGCCAAAGAGCCTACCGCTTCGTCCAGGGAAAGGATTGGGGCTTCAAGAAGTTCATTAGGAGAGACTTCTTGCTGGATGAAGCAAACGGACTTCTTCCTGATGACAAGCTCACTCTGTTCTGTGAGGTGAGCGTGGTTCAAGACTCTGTGAACATCTCTGGCCAGTCGAACACAAACATGCTGAAAGTCCCCGAGTGCCAGCTTTCAGATGATCTGGGCAATCTGTGGGAAGGCTCCAGGTTCACTGACTGCAGTCTGTTTGTTGGAGGACAAGAGTTCAAAGCGCACAAATCCATCCTGGCAGCGAGGTCGCCAGTATTCAATGCCATGTTTGAACACAAAATGGAGGAGAGTAAAAAAAACCGTGTAGACATCAGTGACGTAGAGCCAGATGTGTTTCGGGAAATGATGGTATTTATTTACACTGGTAAAGCTCCCAACCTGGAGAAAATGGCCGACAACCTGTTAGCTGCCGCAGACAAGtacgCTCTGGAGAGACTGAAGGTATTGTGTGAGGAGGCACTGTGTAATAGTCTGTCTGTGGAGAACGTGGCTGATGTCCTCATTCTGGCGGATCTGCACAGCGCAGAGCAGCTCAAAGCACAAGCCATAGACTTCATCAACCGATGCAGCGTTCTTCGACAGCTCGGCTGTAAAGATGGCAAGAACTGGAATAGCAATCACGCCGCAGACATAATGGAAACGGCAGGCTGGAAAGCCATGATTCAATCCCATCCTCACTTAGTAGCCGAGGCGTTCCGCGCTCTGGCTTCAGCCCAGTGCACACCATTCGGCCTGCCTCGAAAACGCCTAAAACAATCCTGACCTCCGTCCTCACAGACTGCTTAAAAACCAAACGCATGAGGAGGCAAAAGCGACCCTTCTTCCCCTCCGTTTTCACTCGCCCGTCGCCCCTTCCAGAGACACGATGGAGGAGCTCGTTCAATCCGAAGAAATGGACTTCGCCATAATGTTTACTACGAGTGGCATCGGAGAAAAGGCCTTAAAGGATCCGCCTGCTGCGACTGATCCCAGACCTGTCTGGATTGCACTAGCTCCCACATAATGCAGTAGTTTTAACATGGTGGTGTTTAGGACCTTGTACGTTACGTGTTGTTGAGGAGGGCGAAGGTTTGCGTTCGCCCTTTTTGTGAACTCATGGTCTGATTTTTTTCACCAAACACTCACTAGTCGCAAAGCCACACACACGCATCGAGTGCAGAGACACTGACACTTTTAAAGTGTTGACGTTGTCGGCAGAATGTCGCTTTGTATGTTTATCGTCGTTAAAAAAAACGAAGTATTAACTGAGGTCGCGCTGTTGGATGCTTGGTGAAAAGAGTTTCACGTCGAGTATGACACGAAAGAAAACAAGCGGCGGAAGATGTCGATATTTTGCACCAACTTATATTATTGGTAAATATGAAGATTTGTTTACCGTGCTGTTTACAGAAAttgttttcccttttttttccGCACAAGAGTTAGTTCGGACTTTTAGTTGGACTTATTTTCCATGGTTTAACGTACTCTGTGATCTGGAGAGTTCTTTGTGTTTGGgggaagaaaaaaatgtattgtggTTCAAAAGAACTTTGGTTTATTGCTTTGGAAATAAAACTGGTCAAAACTAACAAA
>TCONS_00006995
GCAGTGCGCCTGCCTAGAGCTGAAGCGCAGGCAGCGCTATGAGAGACCGAGAGAGAAAAACACCCCTTATCTGTAGAGAAAGGCTCAAAAGTTCACTCGTTTCGCACAAAATTCTTTCTGCGACTCACTCAGGTCACATATCGTACCGTGTTTCTATGTCTGTGATGCGGAGTGTCTGAGAgGAAGCTTGTGCTTCAGACTGTTGTGAACGATCAGGACTGATCGGAGAGGCTATGGATTAAAGCTAATGACATTGTAAACATGTTCAGGGTTCATCGAGTCTGCTGAGAGTGGCATCCCACAGAAGCACCCTCATCTGCCAAGCTCTCCTCTCTGGAAGGCTCGCAAAACTCCCCCAAGTGAGATTCAGCATTCTTACTGAGGATGGCTTGTTTAGAGGCTGAGCTCAGTATGTACTGTTAGTCATTGTTTCCAGTCACTGACGGCTGTGTCTCTGAGCTTGAGCACAGGGATGACATGGAAAC

Function

symbol description
spoplb Predicted to enable ubiquitin protein ligase binding activity. Predicted to be involved in negative regulation of protein ubiquitination; proteasome-mediated ubiquitin-dependent protein catabolic process; and regulation of proteolysis. Predicted to be part of Cul3-RING ubiquitin ligase complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human SPOPL (speckle type BTB/POZ protein like).

GO:

id name namespace
GO:0030162 regulation of proteolysis biological_process
GO:0016567 protein ubiquitination biological_process
GO:0031397 negative regulation of protein ubiquitination biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0031463 Cul3-RING ubiquitin ligase complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0031625 ubiquitin protein ligase binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061103-277 Predicted to enable ubiquitin protein ligase binding activity. Predicted to be involved in negative regulation of protein ubiquitination; proteasome-mediated ubiquitin-dependent protein catabolic process; and regulation of proteolysis. Predicted to be part of Cul3-RING ubiquitin ligase complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human SPOPL (speckle type BTB/POZ protein like).

Ensembl:

ensembl_id ENSDARG00000003974

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006994 False 2473 mRNA 0.48 13 33818179 33842715
TCONS_00006995 True 485 processed_transcript 0.49 4 33818189 33827111

Neighbor

gene id symbol gene type direction distance location
XLOC_003577 thsd7bb coding upstream 45307 33628104 ~ 33772872 (+)
XLOC_003575 NA coding upstream 260086 33312576 ~ 33558093 (+)
XLOC_003576 BX119916.1 coding upstream 389187 33428874 ~ 33428992 (+)
XLOC_003574 nkpd1 coding upstream 526281 33284837 ~ 33291898 (+)
XLOC_003573 NA coding upstream 593434 33218729 ~ 33224745 (+)
XLOC_003579 NA coding downstream 1493 33844208 ~ 33850289 (+)
XLOC_003580 fam43a coding downstream 392641 34235356 ~ 34237802 (+)
XLOC_003581 NA coding downstream 554852 34397567 ~ 34402807 (+)
XLOC_003582 zmat3 coding downstream 679839 34522554 ~ 34537304 (+)
XLOC_003583 NA coding downstream 708309 34551024 ~ 34560739 (+)
XLOC_003369 CR854846.2 misc upstream 17695097 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 21106183 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 21123916 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 21132580 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 21138151 12679732 ~ 12680028 (+)
XLOC_003572 BX530032.1 non-coding upstream 642498 33172336 ~ 33175681 (+)
XLOC_003571 NA non-coding upstream 1058011 32751641 ~ 32760168 (+)
XLOC_003588 CT963136.1 non-coding downstream 1250890 35093605 ~ 35093722 (+)
XLOC_003590 NA non-coding downstream 1347008 35189723 ~ 35194538 (+)

Expression


Co-expression Network