XLOC_003580 (fam43a)


Basic Information

Item Value
gene id XLOC_003580
gene name fam43a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 34235356 ~ 34237802 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006996
acagtgtgtgtgttattcagCGATGCTGCGATCGTAGAAGCACACGCGATATTCCTCCAGTCAACGAAGCGCTCTGCAACTTCGGAAATGCCCTAAAACAAGCCGATAGATGACTAAAGCCTGCTTTGGAGTAGCAGTTAGTCGAATTAGAATCACTACAATAGACATAGCATCTCAAGACGACCAGCATGTTGCCTTGGAAGAAGAATAAATTCGAGCTGATCGAGGAAGACAAGCAGCAGTCCAAGCAGAAGGGCTATGCCGTGAGCCTCAACTACTCCGCGCTCACCTCCTTCGCCAAATCCTGCCCGGAAAGCGCGCTCAACCGAGTCGGCAGCATGTTCAAATCCAAGAGGAAAAAGgtTTAGATATTTGCTGTAGAAACAAGTAAAAACCTCTATAAGACaatcattttttttgcagtgtgagagTTTTTGGGTGCATGAATGTGCCATTTCATCCACTTGACTTGAAAGCGTGCTGTTATAGGGTTCACAAATGTGAAAACCTAGTGAGCTGCCTAtctagaaaacaacaacaacaccaacaaaaAAGATT
>TCONS_00006997
tcagCGATGCTGCGATCGTAGAAGCACACGCGATATTCCTCCAGTCAACGAAGCGCTCTGCAACTTCGGAAATGCCCTAAAACAAGCCGATAGATGACTAAAGCCTGCTTTGGAGTAGCAGTTAGTCGAATTAGAATCACTACAATAGACATAGCATCTCAAGACGACCAGCATGTTGCCTTGGAAGAAGAATAAATTCGAGCTGATCGAGGAAGACAAGCAGCAGTCCAAGCAGAAGGGCTATGCCGTGAGCCTCAACTACTCCGCGCTCACCTCCTTCGCCAAATCCTGCCCGGAAAGCGCGCTCAACCGAGTCGGCAGCATGTTCAAATCCAAGAGGAAAAAGGTGAAAATCACCAGCGAGGACCCTACGTATACTGTCTTGTACCTGGGGAACGCGACCACCATCCAGTCGAAAGGAGACGGATGCACGGATGTGGCTGTCAGCAAGATATGGGGCAAAAGCGAAATGGGCAAAAATGGCACAAAGATGAAGTTAACCATCAGCTCGCAGGGCATCCGAATGGTGCATGTCGACGAGAAGGCAAAGAGACCGGGACATCTGTATTTGTTGCACAGAATCACCTATTGCGTGGCAGACCCCCGGCTTCCCAAGATATTCGCTTGGATCTACCGGCACGAGATGAAGCACAAGGCGGTGATGCTGCGCTGCCACGCAGTGCTGGTCTCCAAGCCGGAGAAGGCGAAGGCGATGGCGCTGCTCCTCTACCAGACCTCCGCGACCGCCCTAGCCGAGTTTAAGAGACTCAAAAGAAGGGATGATGCCCGGCACCAGCAGCAGCAGCTGATTGGGGAGCAAACTATCCCATTGGTGCCCTTAAGGAAGCTGCTAAACGGACAGTGTTACTATAAACCCCCGGTGGAGCGCAGCAGGAGCGCGCCCAAACTGGGCTCAATCACGGAGGACCTGCTcggggaggaggaagaggagaaagCCATGCATTTTGAGTGCGAGGATATTCTGGACACTGATAGCGACTGTGTGGGAAATGGCAAGCAAGAACTGTGCCAGATTATAAACGATTTAGGCTCCATGTGTATAGGGAACGACGTGCAGACGCTGAAAGCCGACCTGAGAGTGACTCGCCTGCTGTCTGGGGAAAGCACCGGGAGCGAGTCCTCCATAGAGAGCAACAACCAGGAGACTGTTTCCGTGCCCAATGGCATCGCGGAGGGGAAAATGCAAGAAGTTGCCTGACATTGAGTGAATCTTTTAGACTGTCTCAGCAATGCTTCatggtaatgatgatgatgatgatgcactGCAAAAGAAAATATTGTCTTTCTTTGAGGTTTTGTCTTGCTTAAAGtacaaaatctaaatatatttatatcaagaagcattttctagaccagtACAAATATAGTTGTgttttcagaaaacaaaacaagtcaAAATCAAGTAAATTTTCCCCTAAAACAAGTAAATTAATCACaacataaatgtaattttaagaaGCAAcatgttttacttgtctagaaagtgcttcttgatttaaaaaggtTTAGATATTTGCTGTAGAAACAAGTAAAAACCTCTATAAGACaatcattttttttgcagtgtgagagTTTTTGGGTGCATGAATGTGCCATTTCATCCACTTGACTTGAAAGCGTGCTGTTATAGGGTTCACAAATGTGAAAACCTAGTGAGCTGCCTAtctagaaaacaacaacaacaccaacaaaaAAGATTGCAGCCTTAAGTAAAATCAGTTGTGCCAAAGTTACAAATGCACTTTTGTAACTATTTTCTGTGGCTTTACTGATTGTTGTTACATGACATGCAAACATTTTATACATAAAATGCTGTCTAGATAGACAGCTCGCTAGGTTTTTGAGACAGAAGCCATGGATGTGTTTGTGGATTTAACAGACACTCGCACAATAATCCCTCATTAGGGGTCTGGATGGAAGCACTCTGCGCAATAAGACGCTTAAAGTCTCTGCTTAACCTCTCTGTGCTGTAAGAGGTTTTTAGGAGAGATCTTGTTTACCTAATAAGTTTCCCTCACGGAAATGCTTTTCTTTTGTTCCTTATGCTTTAATGTCCTGAGATATGTAACTCGTTCGTTCTTTCTATTTCTCTTTCATTCTTTGGAAAGAAGAAGTGTCTAAACTAACTCAACAGTAAGTTACAAAACTACTTTCCTTTCAGGAtgtttcatttgactttttttcttttgcactGTGGTGGAATTCAGACAAgtattatgctattatttatGTGCAACATGGTTTTCCTATACATGTTCTTACAAACATAAACGTTTTATCTTTGCTGTGCAAAAGAAACAATTTTCCTGATGTACAGAGATGTATATGTTAAATATGTGTaaacaaaatgcattattttttaaaacgatGTGGTTTGTTTCTGTGAACAccaataaaacagtaaaacata

Function

symbol description
fam43a Is expressed in several structures, including blood vessel; nervous system; optic primordium; optic vesicle; and solid lens vesicle. Orthologous to human FAM43A (family with sequence similarity 43 member A).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6098 Is expressed in several structures, including blood vessel; nervous system; optic primordium; optic vesicle; and solid lens vesicle. Orthologous to human FAM43A (family with sequence similarity 43 member A).

Ensembl:

ensembl_id ENSDARG00000043009

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006996 False 558 processed_transcript 0.45 2 34235356 34237091
TCONS_00006997 True 2431 mRNA 0.43 1 34235372 34237802

Neighbor

gene id symbol gene type direction distance location
XLOC_003579 NA coding upstream 385067 33844208 ~ 33850289 (+)
XLOC_003578 spoplb coding upstream 392641 33818179 ~ 33842715 (+)
XLOC_003577 thsd7bb coding upstream 462484 33628104 ~ 33772872 (+)
XLOC_003575 NA coding upstream 677263 33312576 ~ 33558093 (+)
XLOC_003576 BX119916.1 coding upstream 806364 33428874 ~ 33428992 (+)
XLOC_003581 NA coding downstream 159765 34397567 ~ 34402807 (+)
XLOC_003582 zmat3 coding downstream 284752 34522554 ~ 34537304 (+)
XLOC_003583 NA coding downstream 313222 34551024 ~ 34560739 (+)
XLOC_003584 si:dkey-202e22.2 coding downstream 522826 34760628 ~ 34779622 (+)
XLOC_003585 slc38a3a coding downstream 586297 34824099 ~ 34914857 (+)
XLOC_003369 CR854846.2 misc upstream 18112274 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 21523360 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 21541093 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 21549757 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 21555328 12679732 ~ 12680028 (+)
XLOC_003573 NA non-coding upstream 1010611 33218729 ~ 33224745 (+)
XLOC_003572 BX530032.1 non-coding upstream 1059675 33172336 ~ 33175681 (+)
XLOC_003588 CT963136.1 non-coding downstream 855803 35093605 ~ 35093722 (+)
XLOC_003590 NA non-coding downstream 951921 35189723 ~ 35194538 (+)
XLOC_003592 NA non-coding downstream 1061041 35298843 ~ 35315234 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_07864325_07865368 MGC80983, FAM43A, FAM43A.L coding CI01000306 null 7864092 ~ 7866319 (+)
bowfin (Amia calva) AMCG00009237 fam43a,LOC106573864,LOC102785697 coding CM030126.1 CM030126.1 30008802 ~ 30009842 (+)