RNA id: TCONS_00006997


Basic Information

Item Value
RNA id TCONS_00006997
length 2431
RNA type mRNA
GC content 0.43
exon number 1
gene id XLOC_003580
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 34235356 ~ 34237802 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tcagCGATGCTGCGATCGTAGAAGCACACGCGATATTCCTCCAGTCAACGAAGCGCTCTGCAACTTCGGAAATGCCCTAAAACAAGCCGATAGATGACTAAAGCCTGCTTTGGAGTAGCAGTTAGTCGAATTAGAATCACTACAATAGACATAGCATCTCAAGACGACCAGCATGTTGCCTTGGAAGAAGAATAAATTCGAGCTGATCGAGGAAGACAAGCAGCAGTCCAAGCAGAAGGGCTATGCCGTGAGCCTCAACTACTCCGCGCTCACCTCCTTCGCCAAATCCTGCCCGGAAAGCGCGCTCAACCGAGTCGGCAGCATGTTCAAATCCAAGAGGAAAAAGGTGAAAATCACCAGCGAGGACCCTACGTATACTGTCTTGTACCTGGGGAACGCGACCACCATCCAGTCGAAAGGAGACGGATGCACGGATGTGGCTGTCAGCAAGATATGGGGCAAAAGCGAAATGGGCAAAAATGGCACAAAGATGAAGTTAACCATCAGCTCGCAGGGCATCCGAATGGTGCATGTCGACGAGAAGGCAAAGAGACCGGGACATCTGTATTTGTTGCACAGAATCACCTATTGCGTGGCAGACCCCCGGCTTCCCAAGATATTCGCTTGGATCTACCGGCACGAGATGAAGCACAAGGCGGTGATGCTGCGCTGCCACGCAGTGCTGGTCTCCAAGCCGGAGAAGGCGAAGGCGATGGCGCTGCTCCTCTACCAGACCTCCGCGACCGCCCTAGCCGAGTTTAAGAGACTCAAAAGAAGGGATGATGCCCGGCACCAGCAGCAGCAGCTGATTGGGGAGCAAACTATCCCATTGGTGCCCTTAAGGAAGCTGCTAAACGGACAGTGTTACTATAAACCCCCGGTGGAGCGCAGCAGGAGCGCGCCCAAACTGGGCTCAATCACGGAGGACCTGCTcggggaggaggaagaggagaaagCCATGCATTTTGAGTGCGAGGATATTCTGGACACTGATAGCGACTGTGTGGGAAATGGCAAGCAAGAACTGTGCCAGATTATAAACGATTTAGGCTCCATGTGTATAGGGAACGACGTGCAGACGCTGAAAGCCGACCTGAGAGTGACTCGCCTGCTGTCTGGGGAAAGCACCGGGAGCGAGTCCTCCATAGAGAGCAACAACCAGGAGACTGTTTCCGTGCCCAATGGCATCGCGGAGGGGAAAATGCAAGAAGTTGCCTGACATTGAGTGAATCTTTTAGACTGTCTCAGCAATGCTTCatggtaatgatgatgatgatgatgcactGCAAAAGAAAATATTGTCTTTCTTTGAGGTTTTGTCTTGCTTAAAGtacaaaatctaaatatatttatatcaagaagcattttctagaccagtACAAATATAGTTGTgttttcagaaaacaaaacaagtcaAAATCAAGTAAATTTTCCCCTAAAACAAGTAAATTAATCACaacataaatgtaattttaagaaGCAAcatgttttacttgtctagaaagtgcttcttgatttaaaaaggtTTAGATATTTGCTGTAGAAACAAGTAAAAACCTCTATAAGACaatcattttttttgcagtgtgagagTTTTTGGGTGCATGAATGTGCCATTTCATCCACTTGACTTGAAAGCGTGCTGTTATAGGGTTCACAAATGTGAAAACCTAGTGAGCTGCCTAtctagaaaacaacaacaacaccaacaaaaAAGATTGCAGCCTTAAGTAAAATCAGTTGTGCCAAAGTTACAAATGCACTTTTGTAACTATTTTCTGTGGCTTTACTGATTGTTGTTACATGACATGCAAACATTTTATACATAAAATGCTGTCTAGATAGACAGCTCGCTAGGTTTTTGAGACAGAAGCCATGGATGTGTTTGTGGATTTAACAGACACTCGCACAATAATCCCTCATTAGGGGTCTGGATGGAAGCACTCTGCGCAATAAGACGCTTAAAGTCTCTGCTTAACCTCTCTGTGCTGTAAGAGGTTTTTAGGAGAGATCTTGTTTACCTAATAAGTTTCCCTCACGGAAATGCTTTTCTTTTGTTCCTTATGCTTTAATGTCCTGAGATATGTAACTCGTTCGTTCTTTCTATTTCTCTTTCATTCTTTGGAAAGAAGAAGTGTCTAAACTAACTCAACAGTAAGTTACAAAACTACTTTCCTTTCAGGAtgtttcatttgactttttttcttttgcactGTGGTGGAATTCAGACAAgtattatgctattatttatGTGCAACATGGTTTTCCTATACATGTTCTTACAAACATAAACGTTTTATCTTTGCTGTGCAAAAGAAACAATTTTCCTGATGTACAGAGATGTATATGTTAAATATGTGTaaacaaaatgcattattttttaaaacgatGTGGTTTGTTTCTGTGAACAccaataaaacagtaaaacata

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6098 Is expressed in several structures, including blood vessel; nervous system; optic primordium; optic vesicle; and solid lens vesicle. Orthologous to human FAM43A (family with sequence similarity 43 member A).

Ensembl:

ensembl_id ENSDART00000063150

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008642 lncRNA upstream 385083 33844208 ~ 33850289 (+) True XLOC_003579
TCONS_00008641 lncRNA upstream 893128 33312576 ~ 33342244 (+) False XLOC_003575
TCONS_00008410 lncRNA upstream 905614 33312693 ~ 33329758 (+) False XLOC_003575
TCONS_00008640 lncRNA upstream 1010627 33218729 ~ 33224745 (+) True XLOC_003573
TCONS_00006986 lncRNA upstream 1059691 33172345 ~ 33175681 (+) True XLOC_003572
TCONS_00008645 lncRNA downstream 159765 34397567 ~ 34402807 (+) False XLOC_003581
TCONS_00008646 lncRNA downstream 159765 34397567 ~ 34402807 (+) False XLOC_003581
TCONS_00008644 lncRNA downstream 159765 34397567 ~ 34402807 (+) False XLOC_003581
TCONS_00008643 lncRNA downstream 159765 34397567 ~ 34402807 (+) True XLOC_003581
TCONS_00008647 lncRNA downstream 313222 34551024 ~ 34560739 (+) False XLOC_003583
TCONS_00006994 mRNA upstream 392657 33818179 ~ 33842715 (+) False XLOC_003578
TCONS_00006993 mRNA upstream 462500 33628104 ~ 33772872 (+) True XLOC_003577
TCONS_00006989 mRNA upstream 677279 33312601 ~ 33558093 (+) False XLOC_003575
TCONS_00006990 mRNA upstream 677279 33426254 ~ 33558093 (+) False XLOC_003575
TCONS_00006991 mRNA upstream 680581 33426510 ~ 33554791 (+) True XLOC_003575
TCONS_00006998 mRNA downstream 284752 34522554 ~ 34537304 (+) False XLOC_003582
TCONS_00006999 mRNA downstream 285330 34523132 ~ 34537126 (+) True XLOC_003582
TCONS_00007000 mRNA downstream 522826 34760628 ~ 34779622 (+) True XLOC_003584
TCONS_00007001 mRNA downstream 586297 34824099 ~ 34914857 (+) False XLOC_003585
TCONS_00007002 mRNA downstream 586302 34824104 ~ 34906875 (+) False XLOC_003585
TCONS_00006995 other upstream 408261 33818189 ~ 33827111 (+) True XLOC_003578
TCONS_00006992 other upstream 806380 33428874 ~ 33428992 (+) True XLOC_003576
TCONS_00006982 other upstream 1638784 32596473 ~ 32596588 (+) True XLOC_003570
TCONS_00006976 other upstream 2043501 32191757 ~ 32191871 (+) True XLOC_003566
TCONS_00006975 other upstream 2249328 31985928 ~ 31986044 (+) True XLOC_003565
TCONS_00007005 other downstream 810840 35048642 ~ 35055532 (+) False XLOC_003587
TCONS_00007007 other downstream 855803 35093605 ~ 35093722 (+) True XLOC_003588
TCONS_00007020 other downstream 2117561 36355363 ~ 36369192 (+) True XLOC_003598
TCONS_00007022 other downstream 2141546 36379348 ~ 36385824 (+) True XLOC_003599
TCONS_00007036 other downstream 2344456 36582258 ~ 36582372 (+) True XLOC_003609

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_07864325_07865368.mRNA True 2228 mRNA 0.46 1 CI01000306 7864092 ~ 7866319 (+)
bowfin (Amia calva) AMCG00009237 True 1041 mRNA 0.58 1 CM030126.1 30008802 ~ 30009842 (+)