RNA id: TCONS_00006998


Basic Information

Item Value
RNA id TCONS_00006998
length 1270
RNA type mRNA
GC content 0.52
exon number 6
gene id XLOC_003582
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 34522554 ~ 34537304 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGAAGATGGCGATGAATGTAAAGAACAGAGATGCTTTTTATTCAGGTGCTGACTATTGCAATATCTACAGCTCTCAGCCTGTAAACTATGGAGATTGCAGCCATTATTTCCCTCGGATCACAGGTCCAGACCCGATTCTGAAGCCCCCTATTAGTTTGATGTGTCAGCAGCCACCTCAGCCCTTCCAGGCCATGACCCCGACTCAGAACCTCAGACCTCCACCAGTGATGATGCCTGACCCCTTGCCATTCCCACACTGCACTCCACCCATAAAGCCACCTCCTCATCTCCAGTTGCCACCCAACCCACCCTTGCCACCACCTCCTGTCATCAGCCCAAAGCCCCCCGAGGAAGATGCTCAGGCTGTGGCCGCTGACCAGGAAGCCACTCTGGAAGAGCTTTGCAAACCTTTGTACTGTAAGCTTTGCAATGTCACTCTCAACTCTGCCCAACAGGCTCAGGCACATTATCAGGGGAAAAACCACAGTAAGAAGCTGCGCAATTTTTATGCCGGTAGCCAACAGCCTCCTCCCATTACAATTCCAGAAGTAGTAGAGCCTGTTTCCCAGCAACCCTCAGCCACTACACCCACAGATTCTGCTAATGCGACTGCCAACCAGCCACTCACTAAGGGCGCCAGCAGAGTAATACTGGCCACGGAAAACGACTACTGCAAGCTGTGCGATGCCTCCTTCAGCTCCCCCGCTGTGGCCCAGGCACACTATCAGGGCAAAAACCACGCCAAAAGACTGCGTCTGGCCGAGGCGCAGCAGAACGCCACGTCCTCagaCTTGTCTGACACTCAGAGACGGCCACGGAAAGAAGGGTACGAGTATCGATTAATGAAGAACCGCAGAGCTCAGTTCAACACTGCCATGCCAGGCCCTTACTACAACCCACGGCCGAGGCAGCGTATCCCACGAGACCTTGCCATGTGCGTCACACCCAGTGGCCAGTTCTACTGCTCCATGTGTAACTCGGGTGCCAGCGAGGAGGCCGAATTTCGCCTACACCTGGAGAGCAAACAGCACAAAAGCAGAGTGTCAGAGCAGCGCTACCGCAGTGAGATGGAGAACCTGGGATACACTTAAGAAGATTAGGGATTCTGAGGAACTAACCTTGCCATTTTGCAAGTAGCcacttttgttttaaaatggaagatgtttttgtttctttatgtGATTAATGTGTTATTCCATAAGCAATTTATGAGCTAGTATTAGCAGCACACATTGCAAAGCAAAGTTTCCTTTGTGCCAGAATGAGAGG

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko04115 p53 signaling pathway

ZFIN:

id description
ZDB-GENE-130530-881 Predicted to enable nucleic acid binding activity and zinc ion binding activity. Orthologous to human ZMAT3 (zinc finger matrin-type 3).

Ensembl:

ensembl_id ENSDART00000109833

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008645 lncRNA upstream 119747 34397567 ~ 34402807 (+) False XLOC_003581
TCONS_00008646 lncRNA upstream 119747 34397567 ~ 34402807 (+) False XLOC_003581
TCONS_00008644 lncRNA upstream 119747 34397567 ~ 34402807 (+) False XLOC_003581
TCONS_00008643 lncRNA upstream 119747 34397567 ~ 34402807 (+) True XLOC_003581
TCONS_00008642 lncRNA upstream 672265 33844208 ~ 33850289 (+) True XLOC_003579
TCONS_00008647 lncRNA downstream 13720 34551024 ~ 34560739 (+) False XLOC_003583
TCONS_00008649 lncRNA downstream 13726 34551030 ~ 34560739 (+) False XLOC_003583
TCONS_00008648 lncRNA downstream 13726 34551030 ~ 34560739 (+) True XLOC_003583
TCONS_00007009 lncRNA downstream 652419 35189723 ~ 35194538 (+) False XLOC_003590
TCONS_00008650 lncRNA downstream 652560 35189864 ~ 35194538 (+) True XLOC_003590
TCONS_00006997 mRNA upstream 284752 34235372 ~ 34237802 (+) True XLOC_003580
TCONS_00006994 mRNA upstream 679839 33818179 ~ 33842715 (+) False XLOC_003578
TCONS_00006993 mRNA upstream 749682 33628104 ~ 33772872 (+) True XLOC_003577
TCONS_00006989 mRNA upstream 964461 33312601 ~ 33558093 (+) False XLOC_003575
TCONS_00007000 mRNA downstream 223324 34760628 ~ 34779622 (+) True XLOC_003584
TCONS_00007001 mRNA downstream 286795 34824099 ~ 34914857 (+) False XLOC_003585
TCONS_00007002 mRNA downstream 286800 34824104 ~ 34906875 (+) False XLOC_003585
TCONS_00007003 mRNA downstream 286958 34824262 ~ 34878156 (+) True XLOC_003585
TCONS_00007004 mRNA downstream 384188 34921492 ~ 35042194 (+) True XLOC_003586
TCONS_00006996 other upstream 285463 34235356 ~ 34237091 (+) False XLOC_003580
TCONS_00006995 other upstream 695443 33818189 ~ 33827111 (+) True XLOC_003578
TCONS_00006992 other upstream 1093562 33428874 ~ 33428992 (+) True XLOC_003576
TCONS_00006982 other upstream 1925966 32596473 ~ 32596588 (+) True XLOC_003570
TCONS_00006976 other upstream 2330683 32191757 ~ 32191871 (+) True XLOC_003566
TCONS_00007005 other downstream 511338 35048642 ~ 35055532 (+) False XLOC_003587
TCONS_00007007 other downstream 556301 35093605 ~ 35093722 (+) True XLOC_003588
TCONS_00007020 other downstream 1818059 36355363 ~ 36369192 (+) True XLOC_003598
TCONS_00007022 other downstream 1842044 36379348 ~ 36385824 (+) True XLOC_003599
TCONS_00007036 other downstream 2044954 36582258 ~ 36582372 (+) True XLOC_003609

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_08022902_08036910.mRNA True 3331 mRNA 0.45 9 CI01000306 8021396 ~ 8037025 (+)