RNA id: TCONS_00008648


Basic Information

Item Value
RNA id TCONS_00008648
length 4594
lncRNA type antisense_over
GC content 0.35
exon number 3
gene id XLOC_003583
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 34551024 ~ 34560739 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAATATTCAGCATGGAAGCAAAACGACAACATTTAAAATCACCACAAAATGTTTATTCAAGGAGAATTttcaatgcaaacacacacaaacactgaatcTTTTTCAATGGGTGCGATAAAAGTTCCATGTGAACTGACATCAAATATATTACTTTTCCATGATCTTGTAGTATGTACACACACAGTTTTGTCTTTCGGTTATGTCATACGAGTGGTGGTGAACATGAAAACGTATTTGGATGCACAGATGAATTCAAATCAGTGATTCTTCACTAACGATGCACTATTACATCAAAACATCTCTATATATTTATTGTGATTCTGGCACCAAATCATAACAATACAAGCAGTCATTTTCCAGAAAATCTCATTTAAATATTCAAGATCTGTTTCAAATGTACAGGAATCATCACAGCACTCTTTGGATACGGTTCGAGGCAACAATTCAGTGCACATAAACATGTTCAGCTAGACTAAAGAAACACAGATTTAACATCGGACACACTCAGATGAACTCAGTTAACAGTTCTGTACTATGTTTTAACCTTTAAAGAAACAGAAATAGGCtgattttacaagtcacctagaatTAAATGGTggagttttatcatttttgaatccattcagatgATTTCCtgatctggcaggagcacttttagcttagcttagcataagtcattgaatcagattagaccattagcataaaaaaaaaatctaagagttttgctaatatttaaagcttgacacttctgTATATAATGTAAccaacagaagagtcaagctttaaataggaaactattgaaacttttatttgaatgttttgagtgtgatgctaatggtctaatctgattcagtgatttatgctaagctaagataaaagtgctcctgccagacctatATATTagctaaatggattaaaaaatgataaatgacTTGCAAAACTAGCTTGTTTCCAAACAAAATGGAGTGCAAATGCAAATGGCTAATAATGATCAGTAACTGTAGAGCAGGTTTAATATCAATACAAATACTGAGATTTTTGTCTTGTTCCCAAATTTGTTAATGTAACAAACAGCTTAAATTTCCCTCTCACGAGCTATTAGAATTCTCAGAAACATGCAgttaaaatcacttttgtaaattgACATGATATAAAAAATACCTGCCTGATTAAAACAACTAGCACTTGAATTGATAATCAGTATCTGATTTAAATGTCAGGTGAAAAAGGTCAATATTTCTTTCCAAGCATATAAAAAACAGCTCTAATAATGTTTTCGGGAGATGAAGTAAATAAAGCTCTTTGACACAatgagtgttttttgtttttctcggACTTCTATGTACAAAGATACAACAATGTTGTCATCCATCCCTCAAAATAACAGAGAGAAACCCTTTCAGATTTGACAAAACAGAAGCACAAATATTGGAGGAGCAGCAAACGAACACACCTGCAGTTCCCATATAGGTATAacagacatttctgtaaatatatgtatattaaatatacatataagaGCCATAGTATTACAAGCCAAGTTCTGAAAAAGTTGTGACATTTTctaaaatgcaaatcaaattttatttaatttacaaaagtaCAAAGAAATATTTTATTGCATCAGAGAGACTCAGATAAACGTAGTTAACTTAGGTCTGTACAATATTTCAATGCTCTCTTCTGAATGATTGCAGAGCAGGTTTAATATCGtaattttgtttctgtcagctttgcgtttttgactgctTGGCGCCACCAAATAATGTGCCGGTTAGTGTTTACCCCATCAgctattttactttttgttacaTGGTTTCCGCTAAATTTATTCTTCCATGGCAGGACGCAatgccaaaattgatcccgccacgtCTACgttacagcttttcattcaaaacattaagtcgtgtgttttttttaatagcgggtgataattgcaccaaaacgtattaaaaggtaagtgaattataacagcgcaaacttttctgttacCATAGTAgagctgtgcgttatttgtttaaccctttaaggttacgtgcttcACTTCACCTCAGAacgcattaataccgctctgtaggtctattggagacattcataaatattcctagcaaatctaactTATGTTGGAGAtttacttgttacataaacacactaaatcgcacttcagcagcgtttacataattacataaatgcgatctcgacttttaatactgcgctcatgacatatgttattgaaataacgccacaggtagttggtagatctgtgtaaaaaagacctgccgccacagctggaaaaaatcctagaggaaacaccgtgttagctttgcatttttgactgtttggcgccatcttgtgattgAATAATGTACAGGTTGaagtatactccatcagctgttttttgtttctgtcagctttgcgtttttgaccgtttggcgccatcttgtgactgaataatgtgcaggttagtgtatactccatcagctgttttttgtttctgtcagctttgcgtttttgaccgtttggtgccatcttgtgactgaataatgcgtaggttagtgtatactccatcagctgttttcgtttctgacAGCTTTGCGTTTGACTGTTTaacgccatcttgtgactgaataatgtgcaggttattgtatactccatcagctgttttttgtttctgtcagctttgcgtttttgaccgtttggcaccatcttgtgactgaataatgcataggttagtgtatactccatcagctgtttttgtttgttagctTTACGTTTGACTGTTTAACACCATCTTGTgattgaataatgtgcaggttagtgtatactatcagctgttttcgtttctatcagctttgctctttttattgtttggcgccatcttgtgaccgAATAATgcataggttagtgtatactccatcagctgtttttgtttctgtcagctctgCGTTTTTGAccgtttggtgccatcttgtgactgaataatgcgtaggttagtgtatactccatcagctgttttcgtttctgacAGCTTTGCGTTTGACTGTTTAACGCCATCTTGTgattgaataatgtgcaggttattgtatactccatcagctgttttcgtttctatCGGCTTTGCGCTTTTTattgtttggcaccatcttgtgaccGAATAATGCtcaagttagtgtatactccatcagcagttttcttttctctttgcaatTTTGACTGATGGCGTCATTTTGTGattgaataatgcgcaggttagtgtacaCTCCATTAGCTGTTTTTCGATTTTGCCACTTTTgcttttaattaaagaattaacaaactattatggCTAAGAACGATGATTTGTGtcagttttgtggcaagtagccatgttaggataaagtacatccagggtggttgttttcacagaataatgGCCTTCAGTTATATACAGCAGTGCTTCGCTTCACTTCATTCTGCAACAacaaccgcctggatgtacttCATCCCTCAAATAATATAACACAACATACCTTGCAATGACATGATTGCCCAATCAGATTtaagtattccagagagccatTTAATAACATTAGTTAAATCATTTTGGCGAGTTAACAAGTAATGAATAACTTcaatttcattaactaacatcaacaaagatgaataaagacTGTAGTAACTGTATTGCTCATTGCTTGTTCATTGTAACTTATGACCGTATTGGAAAGTGCTACCTGtaattctacatttaaaaaaaaatctgcctgaTTAACAGTAATTAATACCAGCATTTACAAAATGTCCTAATTTTTTCAGAACTAGTGTTGTAAAGGTAACCTAAACCCCATTAAGTGCAAATGAAATCTCCCAGGCTTTGTGTAGACCTCATGCCATGTAAACGGATTATGGCTCTTTCAAAACAGAGTGAGAAACCACACACAATACACAAGCACTGGTTATCTTACAGCGACTGGATCAGAGACTCTGGTGTAGTGGACAGTTGGACGGCAGGATGGCTGTGGGTCAGAGCTTCCACTTTCAAATCAATCGACTCCACCTTGCAACCTAAAGACCGAGAACATTTCACAATCAAGAGCTGAACCACATTTTATGAATACATCATATTCAGAAAGTAGGCCAGCAAGCATCTCATGACGGCTTGATGACAGATGACCAGAACGTTTTCCTGCCTTTCTAACTCCATGATCACGGGTTCCAGCCTCTGGACCAAGTCTTCATAGGACTGTGAGGAAAGAGCTGGATTACAACACTCTTCTATTGCAATATTATTGATGCATTTTAATGTGATAGGCTGTAATGTCAATGAAGCAATGCTCAAAATAAATATTGTCTACATGCAAGGTTCTGGAGCAATTATGgattttaaaacaactttaaaaatgcacttttGGACTTACAAATAATAAGTCACTGGCAGTGTTATTTAACAAACATCCATAGAAGTGAGCCTCTGAtaataattacttattttttgtatttaaaaacataataatatatatttttaaaaacaatacttgACTTCTGCCTTGCTTATAACtattgttaagttttttttaataaattgaatgGAGATTTCTGTCTGATTTGTGA

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0048468 cell development biological_process
GO:0030154 cell differentiation biological_process
GO:0030182 neuron differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0051239 regulation of multicellular organismal process biological_process
GO:0051240 positive regulation of multicellular organismal process biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048869 cellular developmental process biological_process
GO:0031638 zymogen activation biological_process
GO:0048666 neuron development biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0022008 neurogenesis biological_process
GO:0048699 generation of neurons biological_process
GO:0001945 lymph vessel development biological_process
GO:0031175 neuron projection development biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008645 lncRNA upstream 148223 34397567 ~ 34402807 (+) False XLOC_003581
TCONS_00008646 lncRNA upstream 148223 34397567 ~ 34402807 (+) False XLOC_003581
TCONS_00008644 lncRNA upstream 148223 34397567 ~ 34402807 (+) False XLOC_003581
TCONS_00008643 lncRNA upstream 148223 34397567 ~ 34402807 (+) True XLOC_003581
TCONS_00008642 lncRNA upstream 700741 33844208 ~ 33850289 (+) True XLOC_003579
TCONS_00007009 lncRNA downstream 628984 35189723 ~ 35194538 (+) False XLOC_003590
TCONS_00008650 lncRNA downstream 629125 35189864 ~ 35194538 (+) True XLOC_003590
TCONS_00008412 lncRNA downstream 738104 35298843 ~ 35315234 (+) False XLOC_003592
TCONS_00008411 lncRNA downstream 738104 35298843 ~ 35315234 (+) True XLOC_003592
TCONS_00007013 lncRNA downstream 1491992 36052731 ~ 36146847 (+) True XLOC_003594
TCONS_00006998 mRNA upstream 13726 34522554 ~ 34537304 (+) False XLOC_003582
TCONS_00006999 mRNA upstream 13904 34523132 ~ 34537126 (+) True XLOC_003582
TCONS_00006997 mRNA upstream 313228 34235372 ~ 34237802 (+) True XLOC_003580
TCONS_00006994 mRNA upstream 708315 33818179 ~ 33842715 (+) False XLOC_003578
TCONS_00006993 mRNA upstream 778158 33628104 ~ 33772872 (+) True XLOC_003577
TCONS_00007000 mRNA downstream 199889 34760628 ~ 34779622 (+) True XLOC_003584
TCONS_00007001 mRNA downstream 263360 34824099 ~ 34914857 (+) False XLOC_003585
TCONS_00007002 mRNA downstream 263365 34824104 ~ 34906875 (+) False XLOC_003585
TCONS_00007003 mRNA downstream 263523 34824262 ~ 34878156 (+) True XLOC_003585
TCONS_00007004 mRNA downstream 360753 34921492 ~ 35042194 (+) True XLOC_003586
TCONS_00006996 other upstream 313939 34235356 ~ 34237091 (+) False XLOC_003580
TCONS_00006995 other upstream 723919 33818189 ~ 33827111 (+) True XLOC_003578
TCONS_00006992 other upstream 1122038 33428874 ~ 33428992 (+) True XLOC_003576
TCONS_00006982 other upstream 1954442 32596473 ~ 32596588 (+) True XLOC_003570
TCONS_00006976 other upstream 2359159 32191757 ~ 32191871 (+) True XLOC_003566
TCONS_00007005 other downstream 487903 35048642 ~ 35055532 (+) False XLOC_003587
TCONS_00007007 other downstream 532866 35093605 ~ 35093722 (+) True XLOC_003588
TCONS_00007020 other downstream 1794624 36355363 ~ 36369192 (+) True XLOC_003598
TCONS_00007022 other downstream 1818609 36379348 ~ 36385824 (+) True XLOC_003599
TCONS_00007036 other downstream 2021519 36582258 ~ 36582372 (+) True XLOC_003609

Expression Profile

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