RNA id: TCONS_00007017


Basic Information

Item Value
RNA id TCONS_00007017
length 1732
RNA type mRNA
GC content 0.49
exon number 2
gene id XLOC_003596
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 36231248 ~ 36237676 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGTGTTGCAGTGTGTTATTGTTGTCTTCTTCGCCTCCTCTGTTAGGGTGAACTGACTCAGTGTAATGAGTGTCTGTGTAATGGACTGACCTGCACATCATGTACATCTGTCAGTGTAATGGTTTCCGCTGCTCTTAAGTGCAAAGACCAAACACAACTCCATCAAGCTCCCTAAAGTGCTGGATAAACTCCACCGATGGACAGATCCGGGATTCGGGAACACTGAAGGATGCTCGACCAGATCTACATGACAGATGTCAGTTGACCTTTAACCGCCAACTGATGTGTCCCCATTCCTGACTGCTAGAAGATGGAGAACCCTACATTTCTGCTTTGTATTTCGcacactacactgtaaacaatggaTGCTTCTGGATTACCTCCAGCAGCAGCAGAGCTCAATGAAACTGAACTTAATGAGACACTGACTCATGGCCACCCCATACATCTGCCTCCCAGCATGCAGTTAGGGAGCATGTCCAACCCGCAGTCACGTTTACGAGACATGTCAGGCCTCGTCGTAATGGTGACCCTTAATGCGATAGCACTAATAGCCAACAGCGCAGTGCTAGCCATAGTGGTGAAAGTGCCACATCTCCGTAAGTTCAGTTTAGTCTGTCACCTTTGCATTGTAGATTTGCTATGTGCCGCTCTGCTAATGCCGCTTGGCATTGTCTGTGGTTCGCCGTTCTTCGCCGGCGTCGTCTTTTCCGTACTCGAATGCAGGTTGTACATATTCCTCAATGCCTTTCTTGTATCTGCCTCAATCTTCACGGTCACTGTGATAAGCATCGAACGCTACTTCTACATCGTGCATCCTATGAGGTACGAGGCTAAAATGACCCCTTGGTTGTCAGCGGCTGTAATGGGACTCGTTTGGGTGGCGTCCACTTTGCTAGGACTCGCGACAGTCTTCGGATGGCCCAGTTATGGAAGTAGAAGCTCAATCGCAGCAACTCACTGCTCCCTCCATTGGAGCCACAGCGGACATAGGAGAGTGTTTGCGATTTTATTCTGCacagtttgtttttgtgtgcCGGCTGCTATTATTATTGCCGTCTATGGGAATGTTTATAAGGTCGCCCACACAGCTGCCCGGGAAAGAGGACCGATCCCGAGTTGGACAATAGCGACGGCTCATCCGAAACGCAGGTCTGATTCGGTCAACAGCCAAACTACAATCATCACCACCAGCACAAGCGTCCGCAGGAATCAAGTCCCTCGTCGGAAAAGGAGAACACTTGTTGGTGGAAAGGCAGCACTTACTTTAGCCATCATCGTGGGTCAGTTCCTGCTCTGCTGGCTGCCTTATTTCGCTTTCCACCTTCATTTATCCCTGGGTATCTCCCATAGTACTTCTGAAGAAGCCGAAGGTCCCGTCACCTGGCTGGCGTATTCGACTTTCGCCGTCAATCCCTTTTTTTACGGCCTGCTCAATCGGCAGATTAGGGAAGAGTTGTGTAAGATATTCCTGTGTTGCCGATCGGCTGGCAGACCAGTGCGACCTTCACCCTCAGGCCACGAACGCTCAGGACATGAAGACTTTTTCCATTTTTTGCACAGGAGAGGTGACAGGGATGGGGTTAGATGCAATTATCACATGGCTACATCGAGGGATACAACGGACCAGACAAGTTTTAGGATACCAGGGCAAATACCTGAAGAGATcacctaaagcaggggtgtccagtCCTGCTTCTGGAAAGTTCTCTgattaaacacacttgaacca

Function

GO: NA

KEGG:

id description
ko04030 G protein-coupled receptors

Ensembl:

ensembl_id ENSDART00000131104

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007013 lncRNA upstream 84401 36052731 ~ 36146847 (+) True XLOC_003594
TCONS_00008412 lncRNA upstream 916014 35298843 ~ 35315234 (+) False XLOC_003592
TCONS_00008411 lncRNA upstream 916014 35298843 ~ 35315234 (+) True XLOC_003592
TCONS_00007009 lncRNA upstream 1036710 35189723 ~ 35194538 (+) False XLOC_003590
TCONS_00007026 lncRNA downstream 256418 36494094 ~ 36500806 (+) True XLOC_003602
TCONS_00007028 lncRNA downstream 267998 36505674 ~ 36515323 (+) False XLOC_003603
TCONS_00007027 lncRNA downstream 267998 36505674 ~ 36515323 (+) True XLOC_003603
TCONS_00007029 lncRNA downstream 282295 36519971 ~ 36528422 (+) True XLOC_003604
TCONS_00007030 lncRNA downstream 303875 36541551 ~ 36547269 (+) True XLOC_003605
TCONS_00007015 mRNA upstream 14597 36158276 ~ 36216651 (+) False XLOC_003595
TCONS_00007016 mRNA upstream 16463 36180349 ~ 36214785 (+) True XLOC_003595
TCONS_00007014 mRNA upstream 16593 36158134 ~ 36214655 (+) False XLOC_003595
TCONS_00007012 mRNA upstream 789900 35364445 ~ 35441348 (+) True XLOC_003593
TCONS_00007011 mRNA upstream 992492 35196662 ~ 35238756 (+) True XLOC_003591
TCONS_00007018 mRNA downstream 6098 36243774 ~ 36249902 (+) True XLOC_003597
TCONS_00007019 mRNA downstream 117672 36355348 ~ 36376073 (+) False XLOC_003598
TCONS_00007021 mRNA downstream 141617 36379293 ~ 36407866 (+) False XLOC_003599
TCONS_00007023 mRNA downstream 170960 36408636 ~ 36415264 (+) False XLOC_003600
TCONS_00007024 mRNA downstream 171781 36409457 ~ 36415700 (+) True XLOC_003600
TCONS_00007007 other upstream 1137526 35093605 ~ 35093722 (+) True XLOC_003588
TCONS_00007005 other upstream 1175716 35048642 ~ 35055532 (+) False XLOC_003587
TCONS_00006996 other upstream 1994157 34235356 ~ 34237091 (+) False XLOC_003580
TCONS_00006995 other upstream 2404137 33818189 ~ 33827111 (+) True XLOC_003578
TCONS_00006992 other upstream 2802256 33428874 ~ 33428992 (+) True XLOC_003576
TCONS_00007020 other downstream 117687 36355363 ~ 36369192 (+) True XLOC_003598
TCONS_00007022 other downstream 141672 36379348 ~ 36385824 (+) True XLOC_003599
TCONS_00007036 other downstream 344582 36582258 ~ 36582372 (+) True XLOC_003609
TCONS_00007048 other downstream 757018 36994694 ~ 36994808 (+) True XLOC_003620
TCONS_00007061 other downstream 976432 37214108 ~ 37214223 (+) True XLOC_003626

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU500854 True 4921 lncRNA 0.39 1 CI01000306 8965702 ~ 8970622 (-)