RNA id: TCONS_00007019


Basic Information

Item Value
RNA id TCONS_00007019
length 4630
RNA type mRNA
GC content 0.37
exon number 6
gene id XLOC_003598
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 36355348 ~ 36376073 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTGTAGAAAGTTTGACAAGTTGGTCGATATAAGTCCTCCGTTTTCCCGCTATCGAAAACCTTGAATGTCATTCTCTCGTGTCCTTTTCTTCTATTAAAAACCAAAATAGGAAACTAAACCGGAATCGAAGTGTTTTGTATCAGCGACAGCGTAAAACCACCCAAACATGGAAGTCGTGCAGAAAGTCATGTCGGGATTTAGTCTGGATTTGGGACCTGTGAAAGAGCCACTGGGATTTATCCGACTCCTGGAATGGgtttttaCCATTTGTGCCTTTGCAACCACTGGTGGTTATGTTGGATCCACTGTTTTCACTCTTAAATGTCCAGACAAAGATGATGTTGATGTTACTGCTAATTTTGGATATCCATTCAGGCTTCCGAGTCACCCATACCTGATTAATCATTGCAATGGCTCCAAGAACACGACTTACCTGCAGGGAGATTTCTCATCCTCAGCTGAATTCTTCGTCTCTATTGGCGTCTTGGGTTTTCTGTACTGTACCTTCACCCTTATCCTGTACTTGGGCTACCAGCAGGTTTACAGGGAGTCGAACCGAGGCCCCATCATCGATCTGGTGGTGACCGGGATCTTTGCCTTCTTGTGGCTGGTTTGCTCCTCCGCCTGGGGGAAAGGTCTGACTGATGTCAAATATGCCACAGATCCGAGCAGGCTTATAATTCTCTGTCTGCCTGAAGATAAATGTGAAATAAAGAGTTACCCATCTGTAGGCCGTCTCAATGCGTCTGTGCTTTTTGGATTCCTGAACCTGATTCTGTGGGCAGGGAACTGCTGGTTCATCTACAAGGAGACTCCGTTTCACAAGCCGGCAAACCCACCAGTAAACGCAGAAGAAGGAGTTTCCTCTTCCTAATCAGACAAAAGCGGCTCCTTCCTCTCCTCTCCACACATCCATACAGCAGAGGACATCACCGTTTGTtcatgtccacacacacacacacactgaagagaAACTACACTTTAATATGCAAAAGCTTCATGCAATGCAGTTCACTACTTATAAATGCAATAAGCTGAATTCATCATTTCTAGAtgtttgttttatcattattattttagtgtCTGCTTGAAGGCACTGACAAAAGCAGGtcgtaaaaaaaattgtatttgatCATAGGTCTCCAACTtaagtcctggagggctgcagctctgcgcagttttgctccaaccctaatcaaactaattaaggtgtTTAAGACTACTTTTGAAcgccttgattagttggatcggCTGTGTTGGAATACGCTTATCTGCGGCCCTCagggaattgagtttaagacctatgtgttagatcaggggtgcccaaactcagtccagtgtcaaggagagtttagctccaaccctaatcaaacatgcctgaacaagctaatcaagctctaaatAGCATACTAggaacttccaggcaggtgtcttgaagcaagttggagctaaactctgctgaacaccagccctccaggactgagtttgccctaTCTATTAGATTAATATCAATTCGGTGACATCTTTCAGCTTtattatgctttttgttttattattaatatttctagtTGACAACCTACGATTTCACAACTCTAAAAATCCACTACAATCAGACTTTATGAAAAATGAGCACCTAAAACACTAGTATCACACTAATATCTAGCTCTAGACGTCGAAAGCTTGCTTTTCCTTGTAGTTTTAACATCTATTTATTGGTGCCTTTTCATTTGCGTTCATGACGGGATGTTTTTTGCACACCCAAAACACACATCTGAGTTCTATTTGTCAAGTAAAGGCAAACAAAAGAAAATCCTCCTGATTTCAGTCATAATAATCTGATATTTAGCATGCaaccttttattttaaagatgtttgCATCAGTTTAAGTgctatttggtttaaaaaaataacaaaaaacactaCACCAAAGGCCATATTTCTTATGCCAACAGGAAAAGTCTGTTAATTATTCAACACTAGGCATTGTTCAGCAGAAAGCAACTCaaattcctggagggcagcagctctgcacaattgaacagcttgattagttggatccCCTGTTAGAATATGGTTGGAagaaaactgtgcagagctgcggccctccaggaattgagtttgagacctatgtatTAGATCAGTAACATTTCAGTGACATCTTACAACTTCTATtgattacaatttttaaatgatGACCTGCGATTTCATAACTCTAAATATCCACTACAATCAGACTTTCTGAAAAATGAGCACCTAAAACACTAGTATCACACTAATATCTAGCTCTAGACGTTGAAAGCTTGTTGTTCCTTGTAGTTTTAACTTCTATTTATTGGTGCCTTTTCATTTGTTCATGATGGGATGTTTTTTTGCACACCCAAAACACACATCTGAGTTCGATTTATCAAACGAAAGAAAATCCTCCTGATTTCAGTCATAATAATCTGATATTTAGCATGCAgccttttattttaaagatgtctGCATCAGTTTAAGCGAtatttcgttaaaaaaaaaaaaaacactacaccaAAAGCCATATTTCTTATGCCAACAGTAAAAGTCTGTTAATTTTTTAACACTAGGCATTATTCAGCAGAAAGCAACTCAAATTCCTagagggcagcagctctgcacagttgaacagcttgattagttggatccGCTGTTAGAATATGGTTGGAggaaaactgtgcaaagctgcggccctccaggaattgagtttgagacctatgtatTAGATCAATAACATTTCAGTGACATCTAAAAATTTCTATtgattacaatttttaaatgatGACCTGCGATTTCATAACTCTAAATATCCACTACAATCAGACTTTCTGAAAAATGAGCACCTAAAACACTAGTATCGCACTAATGTCTAGCTCTAGATGTCGAAAGCTTGTTGTTCCTTGGAGTTTTAACATCTATTTATTGGTGCCTTTTCATTTGTTCATGATAGGATGTTTTTTGCACACCCAAAACAAACATCTGAGTTTGATTTATCAAACGAAAGAAAATCCTCCTGATTTCAGCCATAATAATCTGATATTTAGCATTCAAccttatattttaaagatgtttGCGTCTGTTTAAGTGCTATTTggttaagaaaataataaaaaaacactacacCAAAGGCCATATTTCTTATGCTATCAggaaaaataagttaataattcAACACTAGGCATTCTTTAACAGAAAGCAACTtaaattcctggagagccgcagctctgcacagttttgctccagccctaatcaaaggGCTACTCTTGAACACCTTGGTTAGTTGGACATGCTGTGTTagaatagggttggagcaaaactgtgcagagctgcgaccctcctGGACTGAGTTTGAGCCCTATCTATTAGATTAATATCAATTCGGTGACATCTTACAACTTtaatatgctttttgttttattattaatatttctaattGATGACCTGTGATTTCATAATTCTAAATATCCACTACAATCAGACTTTATGAAAAACGAGCACTTAAAACACTATTATCACACTAATTTCTAGCTCTAGACATCGAAAGCTTGCTGTTCCTTGGAGTTTTAACATCTATTTATTGGTGCCTTTTCATTTACGTTCATGACGGGATGTTTTTTGCACACCCAAAACACACATCTGAGTTCGATTTGTCAAGTAAAGTCAAACAAAAGAAAATCCTCCTGATTACAGCCATAATAATCTGATATTTAGCATGCAgccttttattttaaagatgtttgCATCAGTTTaagtgctattttttttttaaaaattacacaaaaaaaacactacaCCAAAGGCCATATTTCTTATGCCATCAGGAAAAGTCTGTTGATTATTCAACACTAGGCATTGTTCGACAGAAAGCAAACacttgtttaatagttttttctACTGTTCAGAGTAGTAATGTTGTCTTTTGTTTGTATTCAGCTGACTTGAAACTGTAAATGAAGCGTCACATGGGTTTATGTGTATATTTACAGCATCTGTGCATGTTTTACCATCTTATTTTTTACAGGAGAAACCTTTGTTGTATTGCATTCAGTTTGATcctaaaaaaaattgagtaattgTTCAATTACGGTGATTGTCTGTGTGCAGTGTATGATTgttattagtttaattttatatCACCAGTTAAACCTTTTTTATTATATCCTCTAGTAGTTGTTTCAAATGTAAGAGGAGCATTTACTGCCAAATCTGAACGTTTTAATCCAATAACCTGGTATGTGAATTTAGCTTAAATAGTAGACCATTGGAATTAATATAAAAAGGATTATAGCAATGTCGTTTGGGTTCATTAGTGATAACAAAGAGGAGAAAAAGTTAAAAGGGGCATTGTGGTCATCCTCATTTGGTTTTGACAAACATAAAAACGGGCCTTCGTTTGTTCTTGTTCTTGTGTTTTGTATCTCTATTGTGTCTCTAAGTTCAGAAGGAAAATCTCCAGAAGGGCTGTTTGCAGTTTTGGTTAGTATTAAAAGAGGAGAGCTGTAAATATATATTGGCTAttggtttgtgtttttatttcggAAAACAAACTGCTGTTTCCTACATGAAACCACTAGATGGTGGTGTTGTAAGCGCAATAAATCCATCGACTACTAA

Function

GO:

id name namespace
GO:0030672 synaptic vesicle membrane cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0017075 syntaxin-1 binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1434 Predicted to be located in membrane and synaptic vesicle. Predicted to be integral component of membrane. Predicted to be active in synaptic vesicle membrane. Is expressed in pronephric duct. Orthologous to human SYPL2 (synaptophysin like 2).

Ensembl:

ensembl_id ENSDART00000145427

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007013 lncRNA upstream 208501 36052731 ~ 36146847 (+) True XLOC_003594
TCONS_00008412 lncRNA upstream 1040114 35298843 ~ 35315234 (+) False XLOC_003592
TCONS_00008411 lncRNA upstream 1040114 35298843 ~ 35315234 (+) True XLOC_003592
TCONS_00007009 lncRNA upstream 1160810 35189723 ~ 35194538 (+) False XLOC_003590
TCONS_00007026 lncRNA downstream 118021 36494094 ~ 36500806 (+) True XLOC_003602
TCONS_00007028 lncRNA downstream 129601 36505674 ~ 36515323 (+) False XLOC_003603
TCONS_00007027 lncRNA downstream 129601 36505674 ~ 36515323 (+) True XLOC_003603
TCONS_00007029 lncRNA downstream 143898 36519971 ~ 36528422 (+) True XLOC_003604
TCONS_00007030 lncRNA downstream 165478 36541551 ~ 36547269 (+) True XLOC_003605
TCONS_00007018 mRNA upstream 105446 36243774 ~ 36249902 (+) True XLOC_003597
TCONS_00007017 mRNA upstream 117672 36231248 ~ 36237676 (+) True XLOC_003596
TCONS_00007015 mRNA upstream 138697 36158276 ~ 36216651 (+) False XLOC_003595
TCONS_00007016 mRNA upstream 140563 36180349 ~ 36214785 (+) True XLOC_003595
TCONS_00007014 mRNA upstream 140693 36158134 ~ 36214655 (+) False XLOC_003595
TCONS_00007021 mRNA downstream 3220 36379293 ~ 36407866 (+) False XLOC_003599
TCONS_00007023 mRNA downstream 32563 36408636 ~ 36415264 (+) False XLOC_003600
TCONS_00007024 mRNA downstream 33384 36409457 ~ 36415700 (+) True XLOC_003600
TCONS_00007025 mRNA downstream 101408 36477481 ~ 36489816 (+) True XLOC_003601
TCONS_00007042 mRNA downstream 289286 36665359 ~ 36674376 (+) True XLOC_003615
TCONS_00007007 other upstream 1261626 35093605 ~ 35093722 (+) True XLOC_003588
TCONS_00007005 other upstream 1299816 35048642 ~ 35055532 (+) False XLOC_003587
TCONS_00006996 other upstream 2118257 34235356 ~ 34237091 (+) False XLOC_003580
TCONS_00006995 other upstream 2528237 33818189 ~ 33827111 (+) True XLOC_003578
TCONS_00006992 other upstream 2926356 33428874 ~ 33428992 (+) True XLOC_003576
TCONS_00007022 other downstream 3275 36379348 ~ 36385824 (+) True XLOC_003599
TCONS_00007036 other downstream 206185 36582258 ~ 36582372 (+) True XLOC_003609
TCONS_00007048 other downstream 618621 36994694 ~ 36994808 (+) True XLOC_003620
TCONS_00007061 other downstream 838035 37214108 ~ 37214223 (+) True XLOC_003626
TCONS_00007069 other downstream 988373 37364446 ~ 37364560 (+) True XLOC_003628

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_09021191_09031657.mRNA True 687 mRNA 0.45 4 CI01000306 9021059 ~ 9031657 (+)