RNA id: TCONS_00007079


Basic Information

Item Value
RNA id TCONS_00007079
length 2027
RNA type nonsense_mediated_decay
GC content 0.43
exon number 10
gene id XLOC_003630
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 37638873 ~ 37651879 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGGGATTTAGGGGATTAAGGTGAGTCAGGATTGCAAAACCCTCAGCGGATAGTCGACCCACCCTGCCAGATTCAGTCGCGTGGATTAATGTTTTAGAAAAGGCAAACACCACAACCAGGTTCAGTTTGGAACATGGGTGAAACAGCTGGAAGAGAGCATGGGACTGTTACAAGATCAGCTGAGTACATTGGCTCGTTTCCTGTGGATGACAGTTGTTTGGATGATCAGATTCAACAGCTGCACACTCAGCTGAAGTCTCTCAAGAACTGCAAGAGCAAGCGAACCGTGTCTTTGAGATTTTCTGTCAAAGGAGTCAAAGTTTATGATGAAGATGAGACGACGCTGCTCATGGCTCATGCGATGTGTCGAGTCTCCCTGTCCACCGCCCGTCCCTCTGATGCCCAGTTTGCCTTTGCCTCTCATAATCCTGGAAATTCTGATGCCCAGCTCTATTGCCACCTCTTCAGAGCCAGACATGCCCGTGCTGCCCAGTTCCTAAACCTGCTTCTTTGCCGCTGTTTTCAACTGTATTTTCTGgagaagcacccagaggaagctcAGGAGGAGTGTTCGGGGAAGAAGCCGAGTCGAGCTCCATCGTTGCTGAACCAAGGGTTTCCCCTCAGTGTGAGCGCCTTGGTTTCTTTCCGCAGGGCCCCAACTCAAGGTCTGCTGCCAGGAGCTAAGTTGTTTTCACAGCAGAGCACCGAGCAAGTGAGCAGTCCTGAAGAGGGCCCTACTTCCTCTCCAACTATAGTTCGTAAAATGGCGATCCGGACCAAAGAGCTGCGCTCTGGAGCTTATCGCTCTTTTACATTTACCCCCCTCAAACAGCGTCATCTGCAGGACAAACTGAGTGCACCACAAGGTGGGATGAGTGTTCATAGAACACTTTCGAGACTGAAAGAGTTCCTTAGAAAAGGAACAAGCCACTGCAAAGGCATGCATGTCTCGAGCTCCCAGTTTGGCCGAAACAGAAGAAGCACTGGCTCAAGCTGTGTGGTGTTGGGCTGGCGTGTCTAGTGACTGTAGCTCCTCACTGCTGGCAGATGATGTTTTGGGTGCTTTCCTTCTCTGTCCTCATCCCAAAAAGCCCAATCGTGGATCTCTTATAGTTCGTTTTTCCTCTGGACTGGTAACTTATGCTATTAAGAATTCCAAAGGGAAGTTCCGGCTTGAGAAGTGCCACACTGACTTTGAAAGCCTTGCTGCTTTAATGGAGCACTACACAGAGTTCGGTGACGAGCTGGAATGTTCTCTGAGCTGCGCACGCGTCAACCACTGTTACGACTGGGAGGAGATGGTGAATAAGGGTTCACGTTTACTGCAGGACAACAAAAAAGGCACTTTTAAATGCCGAAGTTGGGTTTGAATCATGTATTTCTTTTTAGATCTCATTTTTATGCTATATTTTACTTAGTTTTAGGTATTTGTGGAGCTGTTGATTTTAATAAGCTTCCCAAACAACAGTATCTCAGGTCACTGGCACAGTTTTtgatatatatactttattttttttttaatgaacacatttgtttttgcctGTTGGCAGTAACCTCAACCCAACCTCTAAAACACTCACTTTATtggtgtgtttttctttttttcttaggttttttttttggttgaaagTTCTTTTATAGGGAAACAAGCACTTATGTTTTTCATGTCAGTGTCAGATTTAAATGTGTACTCAACATTTGTATAGagtgcatactgtatatatttgttttactaaCGCTGTATTATGTCtttaaaatcatgtttttgtATGTTGATCTTACATCAGGCTctttttctctcttgtttttatGATGGCAATAGTTTAAGAGAGAATATTTAGTGATAACTTCAAACCCCAAATTGTCTATCACAAatttattaacagttttttttttcttgtactaattaatatttttgtatctCTTGCACATTGCACCTCTCAAATACACACAGTTTCTATTGTTAGCTTTGCACCAATGTAAATGAAGTGATTTGCCTCCTTTACATAAACTGATTTTACACT

Function

GO: NA

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-050327-67 Predicted to be active in postsynaptic density. Orthologous to human SH2D5 (SH2 domain containing 5).

Ensembl:

ensembl_id ENSDART00000003211

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007073 lncRNA upstream 4952 37631714 ~ 37634030 (+) False XLOC_003629
TCONS_00007074 lncRNA upstream 4952 37631780 ~ 37634030 (+) True XLOC_003629
TCONS_00007065 lncRNA upstream 379319 37256303 ~ 37259663 (+) False XLOC_003627
TCONS_00007056 lncRNA upstream 468544 37169813 ~ 37170438 (+) True XLOC_003623
TCONS_00008652 lncRNA upstream 501140 37137076 ~ 37137842 (+) False XLOC_003623
TCONS_00008654 lncRNA downstream 190293 37841257 ~ 37848711 (+) False XLOC_003634
TCONS_00008653 lncRNA downstream 190293 37841257 ~ 37848711 (+) True XLOC_003634
TCONS_00008655 lncRNA downstream 344102 37995066 ~ 38000612 (+) True XLOC_003636
TCONS_00008656 lncRNA downstream 498924 38149888 ~ 38164754 (+) True XLOC_003637
TCONS_00008657 lncRNA downstream 952770 38603734 ~ 38614820 (+) False XLOC_003641
TCONS_00007070 mRNA upstream 7268 37612214 ~ 37631714 (+) False XLOC_003629
TCONS_00007071 mRNA upstream 9689 37612237 ~ 37629293 (+) False XLOC_003629
TCONS_00007072 mRNA upstream 24463 37612672 ~ 37614519 (+) False XLOC_003629
TCONS_00007067 mRNA upstream 340044 37275448 ~ 37298938 (+) False XLOC_003627
TCONS_00007068 mRNA upstream 346098 37278457 ~ 37292884 (+) True XLOC_003627
TCONS_00007083 mRNA downstream 1906 37652870 ~ 37677206 (+) True XLOC_003631
TCONS_00007084 mRNA downstream 69588 37720552 ~ 37726201 (+) False XLOC_003632
TCONS_00007085 mRNA downstream 69619 37720583 ~ 37726112 (+) False XLOC_003632
TCONS_00007086 mRNA downstream 69792 37720756 ~ 37726194 (+) True XLOC_003632
TCONS_00007087 mRNA downstream 117334 37768298 ~ 37831776 (+) False XLOC_003633
TCONS_00007069 other upstream 274422 37364446 ~ 37364560 (+) True XLOC_003628
TCONS_00007061 other upstream 424759 37214108 ~ 37214223 (+) True XLOC_003626
TCONS_00007048 other upstream 644174 36994694 ~ 36994808 (+) True XLOC_003620
TCONS_00007036 other upstream 1056610 36582258 ~ 36582372 (+) True XLOC_003609
TCONS_00007022 other upstream 1253158 36379348 ~ 36385824 (+) True XLOC_003599
TCONS_00007094 other downstream 937487 38588451 ~ 38588566 (+) True XLOC_003640
TCONS_00007097 other downstream 1152647 38803611 ~ 38803738 (+) True XLOC_003642
TCONS_00007127 other downstream 2998507 40649471 ~ 40655871 (+) False XLOC_003667
TCONS_00007131 other downstream 3238216 40889180 ~ 40889294 (+) True XLOC_003670
TCONS_00007137 other downstream 3459705 41110669 ~ 41157928 (+) False XLOC_003675

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU500058 False 36 TUCP 0.50 1 CI01000306 9860480 ~ 9860515 (+)