XLOC_003641


Basic Information

Item Value
gene id XLOC_003641
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 38603734 ~ 38876352 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008657
ttcaattccatgtcaacagctcctttataaatattattcccAATACTTATTTTTCCCGCTGTATATTTGATGGTCTCATATGTTAAAAACTAAGGAGGATGAGATGCATTTGTAAAGCTGGTTATGATTTACACCTCAGTTATATCTTAAAAGCGTGATTCTCGACCAACTAGAATGCTTTAAATGTTCAATATTTGATTCAAATGCGACTCGTACCTTCAAGGCAATTCATGAAACAACACCACAGAGTAGATGATTAAGGCGTTTCTATAATTTCTCAACAGCATCTTGTTTGCTGTTCTCTTTGTCATAAGTCTTTGAGGAAAAGGAAGTGCACTAGAGTTTCTTTGAGGCGAGATTAATTGGTGCAGAACTCATACTAAAGGTTTGAGTTGGGATGTTTTCAAGCATGTGTGAAGCCCTCATTATAATGTTTATATCAAAACTCTAGCAGGACTTTTCCTTGGTTTCTGTCTGCGGATGAAGGAAAACATGATCAAAGTGTGACTCTCGCTAACCAAATCCCACCAGAAATGTCGGATACAAAGGAggattgaagttttttttttttttaaaccgagGTGCCAACATGTTGagcaaaaaaaatcctaaaaaaaatcaaaaggttgCATCAATAGTTTTCAGGGTTTGTCTTTTTATATCCTTTGCCTTATATTTACCTCTGTTGTCAAAGGATTGCTGTTCTCCTGCTACAATTCAAACACCTCGGAGATGAAGAGGATCCAAGATGGAAGCTTTTGTTGATGCTGTCATATCTGCGTAGCACTGTGGGTTCAACTAAAGGTTATCAGGTTCTCAGTGGCATGGTTGCACCTGGCATAGAACGAGAAAGAAGACGTGGATTTTTACATCGTCCACAAACTGGCATCCCACAGGGTTCTGTCAGCGGACTGCTATTGTTATCTTTTCAAACAGTTTGACTTTGTTCATtggtgtaatattttacaattgctCTCTATTTGAAGGTAGATCAGGAGGCTCTGAAACCAGAGATGGTCATGGACAGGTCAGCTGGAAGCAACTCTATCACCATcttttcaCAAAAATTAGTTGGAGATCAAGCAATAATTGGCAGACCCCCTGCAGTATGGCTGCGGACCCCCTGTCGAAGTCCCCGAAGATTATAGAGATGAAAACAAAGCCGTTACTGTAGAGGATTCACGACAAGAGACCTGCATGTGGACTCTTATCACTTATCAAAGCCTGTTTCTGCCTGcagatgaaaaaaaatgaatttaaaaa
>TCONS_00007095
ACATTTAGCTGAACTTCAGCTGTGGTTTAAgttgatgtaatatttttattttattttcagcttttcaCAAAAATTAGTTGGAGATCAAGCAATAATTGGCAGACCCCCTGCAGTATGGCTGCGGACCCCCTGTCGAAGTCCCCGAAGATTATAGAGATGAAAACAAAGCCGTTACTGTAGAGGATTCACGACAAGAGACCTGCATGTGGACTCTTATCACTTATCAAAGCCTGTTTCTGCCTGcagatgaaaaaaaatgaatttaaaaagGTTTGCGATTttcatgaggCGCATCACCTTTATGATGACGAATATGAGCAAGTGGACAACTGGAGATTGCAGCTAAAAACCCAAGAACTAAAGTGGGATGCGATCAATGAAATGGACGAGTACTTCAGCCCCATCCACACATACCAGGTGTGCAATGTGATGAGCCCAAGTCAGAACAACTGGCTGCGCACCAACTGGATCCAGCGGGACGGTGCGCGACGGATCTACATTGAGATGAAGTTCACCTTGCGCGACTGCAACAGCATGCCGGGCGTCCTTGGCACCTGCAAAGAGACCTTCAACCTCTACTACTACGAAACAGACCGGGACGTGGGCACCAGCATCTGGGAGAGCCAGTTCTCTAAAATCGACACCATCGCGGCAGACGAGAGTTTTACCAATGTGGATCTGGGAGTGCGGAGACTCAAACTTAACACTGAGATCCGTGGTGTCGGGCCGCTGGGAAAACGTGGCTTCTACTTGGCCTTCCAGGATATCGGAGCGTGCATCGCCATCGTGTCGGTGCGGGTGTATTATAAACGCTGCACGGGAATGGCGCGCAACCTGGCCATCTTCACCGATGTGGTGACGGGCGCAGATTCGTCCTCATTGGTTGAGGTTCGGGGTCAATGTGTGGATCACGCTGAGGAAAGAGACACGCCCAAGATGTACTGCAGCGCTGAGGGGGAGTGGCTTGTTCCTATTGGACGATGCGTGTGCAGCGCTGGCTTCGAAGAACATAGAGACAACTGCATTGcgTGTGAGGTGGGTTTCTACAAGCCTGTGGCAGGAGATCAGCAGTGTGGAAAATGTCCTCTGCACAGTCACTCTGAGACTCGAGCAGCTCTGTCCTGTCCCTGTGATGCCAACTTCTATCGCTCATCTACAGATCCACCTTCTTCTCCCTGCACAAGACCTCCATCAGCCCCAGTGAACATCATTTCATCAGTGAACGGGACGTCGGTCAGTCTGGAGTGGGTTTCCCCTCTGGACACCGGAGGCCGCAGTGATGTGATCTATGACGTCCTCTGCCAGAAGTGTGATAAAGATGGGTTACAGTGCGAGGACTGTCGGGTGGGTGTGGGTGGAGGTAATGGGGTGGTTAATAGTAATGTTAATGGAGCTTCAGGAGACACCAGTGGAGCTGCTGGCGGGACAGTGGGAGCCTTGAATGGGCTTGTAGTGGCCAGGTCAGGAGCTGCTCTGGTGCGCTTCATCCCACAGCGAACAGGACTTACTGAACCATGGGTGACTGTGCTGAATCTCGCCGCTCATGCTAACTATACCTTCCGAATTATGGCGCTAAACGGAGTCACGCATCTGAGCAACGAGCAGCCGCAGTCTGTGATGGTCAATATCACCACTAACCAGGCAGCTCCATCTGAAGTGATGGCCGTCCGGCAGGAAAACGCCAGTCAGAACAGCGTCACTCTTTTCTGGCATGAACCAGCGCAGCCTAACGGAGTCATATTAGAGTATGACATCAAATATTACGAAAAGGACAATGAGCAGCAAAGTTATGCTACACTGAAGTCAAAGAACACCAGTGCTAAAGTGTCCGGTTTGAAGCCTGGAACGAGTTATATCTTCCAGATTCGGGCCAGAACCTCGGCCGGCTGTGGACGCTTCAGTCAGTCAGTAGAGATACAGACGGGCAAAGCACCTCCCCTGCGAAATACCAACGTGACGATTATCTGGATCTGCATGGCTTCGGTAACAGGACTGGTGACATTTCTGGCCGTTGTCATCTGCAGAAAACGACGCTGTGGGTACAGCAAAGCTTTCCAGGACTCAGACGAGGAGAAAATGCACTACCAAAATGGCCACGTATCATTTCCAGAAGCCAGATTTTATATTGATCCCCACACATATGAGGACCCCTGCCAGGCTGTCCACGAGTTTGCCAGAGAAATTGAAGCATCCAGGATCAAAATAGAGAAAATCATTGGTTCAGGAGAGTTTGGGGAAGTGTGTTACGGCCGGATGAAGCTGCCGGGGAAACGTGACGTCCCGGTGGCTCTGAAGACTCTTAAAGCCGGATACACCGAGAAGCAGAGGAGAGATTTCCTGGCTGAAGCCAGCATTATGGCACAGTTCGACCACCCAAACGTCATCCACCTCGAGGGGGTGGTTACTCGCAGCAAACCGGTAATGATCATCACAGAGTACATGGAGAACGGCTCCTTGGACTCTTTCTTGAGGAGACACGACGGTCAGTTCACCATTATTCAGCTGGTTGGGATTCTGCGTGGCATCGCGGCTGGCATGACTTACTTGGCTGATCTGGGTTACGTCCACCGGGATTTGGCCGCCAGAAACGTTCTGGTCAACAGTAATCTGGTGTGCAAGATCTCAGACTTCGGGCTTTCACGAGTGCTGGAGGACGATCCTGATGCAGCGTATACCACCAGCGGAGGGAAGATCCCCATCCGCTGGACAGCACCGGAGGCCATCGCCTATCGAAAGTTTTCCTCCTCCAGTGATGTGTGGAGTTATGGAGTGGTGATGTGGGAAGTGATGTCATATGGAGAACAGCCATATTGGAACTTGACCAACAGAGATgtGATCAAGTCCGTAGAGGAGGGTTACCGTCTCCCAGCCCCCATGGGCTGCCCCGGGGCCCTCCACACCCTCATGCTGGACTGCTGGCAGAAAGACCGCAACGAAAGACCCAAATTCTGCCAGATCGTCACAGTCCTGGACAAACTGATCCGCACTCCTGAAACACTCAAATCAGTGGAAACATTGTGCAGACTAAACAGTCCTTTGATGAACAGAAGTATTCCTGATTTCACCAGCTGCAGATCGGTGGACGAGTGGTTGGACACCATTAAAATGGGCCGCTATAAGGACCACTTTGCCGCAGGAGGGTATCGCACACTTGGACATGTGATGAGCATGAAACAACACGACATCCAGCGGTTGGGCGTCACGTTAATGGGCCACCAGAAGAAGATCATGACCAGCGTCCAGGTGATGAGAGCGCAAGTACTGAACCAGAGCGTGCCCTCCGTGCACATATAGTCACTGACTGATCTGATACATGTTTGGGTCTCATGTacgaactgcaaaaaaaaaaaactctccccTCCTTAACAAAAACTGGACTATTACTGCGATAAAGgatggaggttttttttttcttcttcttcagcaATGATCTCTCTTCTCTTTTACttccttttgtaaatgtttggaCTGCCTTAAATGACATAATTTAAATATCGTTGTACATGGATAAAGATTTTATTGAATTCTAAAGTCATGAATATGTAATGAGCGGACTTAATGAATATTAAAACCATGGAGATGAATATGCATAGTGTACAAGTTTGGCCACACCCACCACAGCGCCGGATGAAACTACGAGTGCCTGAAACATGACACCGAGAAAAAACAAGACGTCGCAAGAGAATAAACGAATAATCTACTGTATGACAAAACCGAAACCCTCCGGAGGAAACGTTCAGCTTCTTCACAAGATTACGGACAAACGCTGAATTAgtctctgtggtcataaaaagaGGGGGGAAAGGCAATTATGTATGTCATGTGTTTGATTAAACGCTCTGAAACTCAAGCGGCTGTTATTTATTGCGTACAGCGGCGAATCCCTCTGGAAATGAGAggaataaatgtgtgtaaatgttggTCTGCGGAAAACAGAAGCGCTTTTGAAATCTGTCTGAAATGGAGTGTGTGTCTTTCTTTCAGAGTTCAGACCCATTTGGAAATATTTGTTCTTAGCGTTCGCAGAGTTCGGGCTGTTTTACATCGGATACATGATTCATTTTGGTGCGAAATGAACATAAATGTGTGGATTTTGATGGGACTGACGCTTTTAAAGTCAACGTGAAATTAAAACTGACCCTGATTACTTTTCTCAGTGTATTATTATGGACGGTTCATCATCGgtgcatgttttattttgtcattaaaatgcattttaaatgcattaaacttTGTTGTCAGTACaaatttcatgttgactttaccAAAACACTGGACCTCATTTAATTTTTGACAACAGGGTATTATCTGTATGttcattcttatttttttatttattaaattatgattaatcagatttaattaaattaattgtgcGTTTGTTTGGTGGAATTAGTTTCCCATGAATCGTAtatgtaaatatgaataaaatactgtttttttttggcgcgctctttctttgtttctttgcaaataaaaacaaaacactgtcaTTTTGTGTCTTTCAATGCATTTAGCGAACGCAGAGaggatatttaaatgtgtttatcaaTATGATAATGTTTTAGTATCATGGAGGTACTTGTGTTAACGTTTCGatatgtttcttttatttttatatttgtgttcATTAAAATGTATTGGTTTTCTTAATTTTGGTG
>TCONS_00007096
gcttttcaCAAAAATTAGTTGGAGATCAAGCAATAATTGGCAGACCCCCTGCAGTATGGCTGCGGACCCCCTGTCGAAGTCCCCGAAGATTATAGAGATGAAAACAAAGCCGTTACTGTAGAGGATTCACGACAAGAGACCTGCATGTGGACTCTTATCACTTATCAAAGCCTGT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000023609

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008657 False 1263 lncRNA 0.39 3 38603734 38614820
TCONS_00007095 False 4661 lncRNA 0.47 19 38614476 38876352
TCONS_00007096 True 175 lncRNA 0.46 2 38614535 38614785

Neighbor

gene id symbol gene type direction distance location
XLOC_003640 AL929286.1 coding upstream 15168 38588451 ~ 38588566 (+)
XLOC_003639 mfsd4aa coding upstream 145328 38429319 ~ 38458406 (+)
XLOC_003638 CDK18 coding upstream 182915 38280454 ~ 38420819 (+)
XLOC_003637 NA coding upstream 438980 38149888 ~ 38164754 (+)
XLOC_003636 NA coding upstream 603122 37995066 ~ 38000612 (+)
XLOC_003643 NA coding downstream 11530 38887882 ~ 38907795 (+)
XLOC_003644 NA coding downstream 23349 38899701 ~ 39014692 (+)
XLOC_003645 NA coding downstream 52755 38929107 ~ 38930238 (+)
XLOC_003646 NA coding downstream 91763 38968115 ~ 38968511 (+)
XLOC_003647 CU210919.1 coding downstream 201258 39077610 ~ 39083043 (+)
XLOC_003369 CR854846.2 misc upstream 22480652 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 25891738 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 25909471 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 25918135 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 25923706 12679732 ~ 12680028 (+)
XLOC_003634 NA non-coding upstream 755023 37841257 ~ 37848711 (+)
XLOC_003628 CR936337.1 non-coding upstream 1239174 37364446 ~ 37364560 (+)

Expression


Co-expression Network