XLOC_003639 (mfsd4aa)


Basic Information

Item Value
gene id XLOC_003639
gene name mfsd4aa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 38429319 ~ 38458406 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007093
TTTGGGAGTCGGACAAGCATCGTCGCTCTGATCGCTCTGAGCACGCGACTCTCCCTTCAGACAAGTTTTCTCATGCATAAGAAGAATTGCAAATGCTCCAGAGAGACTTCAGAAAGTTTCTCCAGCATGACTTATCTGCTCAACGAACGGATCTGCGCGTTATTCCGCAGTAACTGGCAGCATACTCTTACATACTGGAGTGTTTTCTTCAGTTTTGGACTGTGTGTCGCTTTTTTGGGTCCGACCATCCTGGACctgaggtgtcaaactcagtccACTTTACAGGAGATCACTCTGGTCTTCTTTTCCCAGCAGTTTTTCCTCTTTCTTGGAAGCACAATTGGAGGATTCTTCAGTAAAACGCTTGTAAGTTCGCTGTCATCTCTGGCCGTATCCACCCTCATTATCTCTGTGGTTTTTGCCATCATCCCATTATGCCGCGAGCTTCTCATGTTGGCGTTTGCCATGGCAGTGTCTGGTCTTGCCATGGGCATCATCGACACCATCTCTAACCTGCAGCTGGTCAAGATCTACCAGAAAGACTCCACCGTTTTCCTGCAGGCTCTCCACTTTTTTGTGGGTCTCGGGGCGTTAGTGAGTCCCCTTATTGCTGACCCTTTTCTGTCTGACACCAGCTGTGTGATCGGCAACAGCAGCGTCAACACAACATCATTAGAAGATCTGAGGAACAAGCTGGCGGGCAGACATGTGCACAACGTGTCCAACGTCCACCTTCACACCGACGGAGAGGTGGTGACCAACGTCTCCTACGCCTTCTGGATCATGGCTATCATCAATCTTCCAGTGCCCATCGCGATATTCGTCCTGATATATCGAGAGCGGTTGTTCATGTGTGGATCAGACCCCAGTCGACGTTTACTAGACGGAGACGTGTTGGCAATAAAACCCCGGGGAACATCCATCCTGGCAGAAGACACCGGCCAGAAAGAGACATCCAACAGTCACGCAGACTTGTTCAGCTGCTGTCTGCTTGGCAAAGCACACAGTTTCCCGCTGTCTTTCTTCGGGATCCACGTCCTCGGGGGTCTGGTGCTCTTCTTTTCTGATGGTATAGTGGGCTCATACACCGGCTTTGTGTACACGTATGCAGTGGCGCCCCCTATGAATCTGCCTCACAAGACCGCCGGATATTTGACTTGCATCTTCTGGGCTGCGATCACCACCGGCCGACTGTCTGCTATTCCTCTGTCCTACCGCTTCAAACCCGTCCGGCTGCTCATCGTCAGTCAGGTGGGAGTGATCGTCACAGTTCTTCTGCTGCTCATCTTCTCCAACAGCAGTGTTTTTCTCTTCATCGGCACCTGCTGTCTCGGCCTGTTTATAAGCAGTATCTTCCCCTGCATGCTGGCGCTCACTGAAGACATCCTGGAGTATAAAGGCTGTGCCACCACGGTGCTGGTGACCAGTGCAGGAATGGGCGAGATGGTGCTCCAGGTGCTCGTGGGTTCGGTGATGCACAGTCGGGGCAGCTTCAGTTTCCTGCTGTGTGGGATGATCTTCGGCTGCCTGGGATTCACTTTCTTCACTTTTCTCTACTTCGTCCAGCAGAGTCATAAAAGCTATACGGAAGCTTTGCCCGGTAACTCTCCTGTGGAACGACATGAGGAAAATGGGATCAAGACCTGCTCTGCTGCGGTCCTGAACTCATGGGACACGCCAGAGCACAAAACATCCCTGGATCCATAACAGTGGAAGAAGATTGATGAAAATATGACCGGTGCAAAGGGACCATGGTGTCGATGACTCAGGGAGAAAAGCAATAATATTCTCGGATAATTACGCAATTCGTTGACAATCTACATAGCTGACCGTCACCGAGTGTTAAAACGTATGAGATCTTGAACTAAaggtttatttttgtatttaaatatattttgctgaACGGATGAATGTGCACAAATGTGTCGCGATTTTGTAATTTTCAATGTCATGTGGTTATGTGCAATACAGTAACTTTTCTAACAAGACATGGCTTAGTGTTTGTTGTTAGAAATGGAGTGATGGATGACAGtaacaaaaatacagtattttttaaaatttgtgtaaGTAaagttgtctttaaaaaaaaaaaataaatgcatccaAAGGCTCGCTCACAAtggtagtgtgtatgtgtgatacTGAAAATGAAATGATGTCTCAATATGTTTTCGATGTTGGTGTTTTTTGGCTCATTGTGGGTAAAATAAATATGACCGCAAAATGGCCAGTAGATGGCAAC

Function

symbol description
mfsd4aa Predicted to enable glucose transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in diencephalon and yolk syncytial layer. Orthologous to human MFSD4A (major facilitator superfamily domain containing 4A).

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function
GO:0005355 glucose transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1643 Predicted to enable glucose transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in diencephalon and yolk syncytial layer. Orthologous to human MFSD4A (major facilitator superfamily domain containing 4A).

Ensembl:

ensembl_id ENSDARG00000023768

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007093 True 2242 mRNA 0.48 10 38429319 38458406

Neighbor

gene id symbol gene type direction distance location
XLOC_003638 CDK18 coding upstream 8500 38280454 ~ 38420819 (+)
XLOC_003637 NA coding upstream 264565 38149888 ~ 38164754 (+)
XLOC_003636 NA coding upstream 428707 37995066 ~ 38000612 (+)
XLOC_003635 si:ch211-112f3.4 coding upstream 505432 37905630 ~ 37923887 (+)
XLOC_003634 NA coding upstream 580608 37841257 ~ 37848711 (+)
XLOC_003640 AL929286.1 coding downstream 130045 38588451 ~ 38588566 (+)
XLOC_003641 NA coding downstream 145328 38603734 ~ 38876352 (+)
XLOC_003642 FO744851.1 coding downstream 345205 38803611 ~ 38803738 (+)
XLOC_003643 NA coding downstream 429476 38887882 ~ 38907795 (+)
XLOC_003644 NA coding downstream 441295 38899701 ~ 39014692 (+)
XLOC_003369 CR854846.2 misc upstream 22306237 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 25717323 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 25735056 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 25743720 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 25749291 12679732 ~ 12680028 (+)
XLOC_003628 CR936337.1 non-coding upstream 1064759 37364446 ~ 37364560 (+)
XLOC_003626 CABZ01065569.1 non-coding upstream 1215096 37214108 ~ 37214223 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_10241081_10252745 MFSD4A coding CI01000306 null 10241081 ~ 10252864 (+)