RNA id: TCONS_00007093


Basic Information

Item Value
RNA id TCONS_00007093
length 2242
RNA type mRNA
GC content 0.48
exon number 10
gene id XLOC_003639
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 38429319 ~ 38458406 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTGGGAGTCGGACAAGCATCGTCGCTCTGATCGCTCTGAGCACGCGACTCTCCCTTCAGACAAGTTTTCTCATGCATAAGAAGAATTGCAAATGCTCCAGAGAGACTTCAGAAAGTTTCTCCAGCATGACTTATCTGCTCAACGAACGGATCTGCGCGTTATTCCGCAGTAACTGGCAGCATACTCTTACATACTGGAGTGTTTTCTTCAGTTTTGGACTGTGTGTCGCTTTTTTGGGTCCGACCATCCTGGACctgaggtgtcaaactcagtccACTTTACAGGAGATCACTCTGGTCTTCTTTTCCCAGCAGTTTTTCCTCTTTCTTGGAAGCACAATTGGAGGATTCTTCAGTAAAACGCTTGTAAGTTCGCTGTCATCTCTGGCCGTATCCACCCTCATTATCTCTGTGGTTTTTGCCATCATCCCATTATGCCGCGAGCTTCTCATGTTGGCGTTTGCCATGGCAGTGTCTGGTCTTGCCATGGGCATCATCGACACCATCTCTAACCTGCAGCTGGTCAAGATCTACCAGAAAGACTCCACCGTTTTCCTGCAGGCTCTCCACTTTTTTGTGGGTCTCGGGGCGTTAGTGAGTCCCCTTATTGCTGACCCTTTTCTGTCTGACACCAGCTGTGTGATCGGCAACAGCAGCGTCAACACAACATCATTAGAAGATCTGAGGAACAAGCTGGCGGGCAGACATGTGCACAACGTGTCCAACGTCCACCTTCACACCGACGGAGAGGTGGTGACCAACGTCTCCTACGCCTTCTGGATCATGGCTATCATCAATCTTCCAGTGCCCATCGCGATATTCGTCCTGATATATCGAGAGCGGTTGTTCATGTGTGGATCAGACCCCAGTCGACGTTTACTAGACGGAGACGTGTTGGCAATAAAACCCCGGGGAACATCCATCCTGGCAGAAGACACCGGCCAGAAAGAGACATCCAACAGTCACGCAGACTTGTTCAGCTGCTGTCTGCTTGGCAAAGCACACAGTTTCCCGCTGTCTTTCTTCGGGATCCACGTCCTCGGGGGTCTGGTGCTCTTCTTTTCTGATGGTATAGTGGGCTCATACACCGGCTTTGTGTACACGTATGCAGTGGCGCCCCCTATGAATCTGCCTCACAAGACCGCCGGATATTTGACTTGCATCTTCTGGGCTGCGATCACCACCGGCCGACTGTCTGCTATTCCTCTGTCCTACCGCTTCAAACCCGTCCGGCTGCTCATCGTCAGTCAGGTGGGAGTGATCGTCACAGTTCTTCTGCTGCTCATCTTCTCCAACAGCAGTGTTTTTCTCTTCATCGGCACCTGCTGTCTCGGCCTGTTTATAAGCAGTATCTTCCCCTGCATGCTGGCGCTCACTGAAGACATCCTGGAGTATAAAGGCTGTGCCACCACGGTGCTGGTGACCAGTGCAGGAATGGGCGAGATGGTGCTCCAGGTGCTCGTGGGTTCGGTGATGCACAGTCGGGGCAGCTTCAGTTTCCTGCTGTGTGGGATGATCTTCGGCTGCCTGGGATTCACTTTCTTCACTTTTCTCTACTTCGTCCAGCAGAGTCATAAAAGCTATACGGAAGCTTTGCCCGGTAACTCTCCTGTGGAACGACATGAGGAAAATGGGATCAAGACCTGCTCTGCTGCGGTCCTGAACTCATGGGACACGCCAGAGCACAAAACATCCCTGGATCCATAACAGTGGAAGAAGATTGATGAAAATATGACCGGTGCAAAGGGACCATGGTGTCGATGACTCAGGGAGAAAAGCAATAATATTCTCGGATAATTACGCAATTCGTTGACAATCTACATAGCTGACCGTCACCGAGTGTTAAAACGTATGAGATCTTGAACTAAaggtttatttttgtatttaaatatattttgctgaACGGATGAATGTGCACAAATGTGTCGCGATTTTGTAATTTTCAATGTCATGTGGTTATGTGCAATACAGTAACTTTTCTAACAAGACATGGCTTAGTGTTTGTTGTTAGAAATGGAGTGATGGATGACAGtaacaaaaatacagtattttttaaaatttgtgtaaGTAaagttgtctttaaaaaaaaaaaataaatgcatccaAAGGCTCGCTCACAAtggtagtgtgtatgtgtgatacTGAAAATGAAATGATGTCTCAATATGTTTTCGATGTTGGTGTTTTTTGGCTCATTGTGGGTAAAATAAATATGACCGCAAAATGGCCAGTAGATGGCAAC

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function
GO:0005355 glucose transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1643 Predicted to enable glucose transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in diencephalon and yolk syncytial layer. Orthologous to human MFSD4A (major facilitator superfamily domain containing 4A).

Ensembl:

ensembl_id ENSDART00000029157

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008656 lncRNA upstream 264565 38149888 ~ 38164754 (+) True XLOC_003637
TCONS_00008655 lncRNA upstream 428707 37995066 ~ 38000612 (+) True XLOC_003636
TCONS_00008654 lncRNA upstream 580608 37841257 ~ 37848711 (+) False XLOC_003634
TCONS_00008653 lncRNA upstream 580608 37841257 ~ 37848711 (+) True XLOC_003634
TCONS_00007074 lncRNA upstream 795289 37631780 ~ 37634030 (+) True XLOC_003629
TCONS_00008657 lncRNA downstream 145328 38603734 ~ 38614820 (+) False XLOC_003641
TCONS_00007095 lncRNA downstream 156070 38614476 ~ 38876352 (+) False XLOC_003641
TCONS_00007096 lncRNA downstream 156129 38614535 ~ 38614785 (+) True XLOC_003641
TCONS_00008658 lncRNA downstream 429476 38887882 ~ 38907795 (+) True XLOC_003643
TCONS_00008660 lncRNA downstream 441295 38899701 ~ 38948609 (+) False XLOC_003644
TCONS_00007091 mRNA upstream 8500 38280454 ~ 38420819 (+) False XLOC_003638
TCONS_00007092 mRNA upstream 8500 38332419 ~ 38420819 (+) True XLOC_003638
TCONS_00007089 mRNA upstream 505432 37905630 ~ 37923887 (+) False XLOC_003635
TCONS_00007090 mRNA upstream 508735 37909654 ~ 37920584 (+) True XLOC_003635
TCONS_00007087 mRNA upstream 597543 37768298 ~ 37831776 (+) False XLOC_003633
TCONS_00007099 mRNA downstream 646613 39105019 ~ 39112255 (+) False XLOC_003648
TCONS_00007100 mRNA downstream 648725 39107131 ~ 39112251 (+) True XLOC_003648
TCONS_00007101 mRNA downstream 661900 39120306 ~ 39148199 (+) False XLOC_003649
TCONS_00007102 mRNA downstream 661926 39120332 ~ 39142081 (+) False XLOC_003649
TCONS_00007103 mRNA downstream 676644 39135050 ~ 39148198 (+) False XLOC_003649
TCONS_00007079 other upstream 778355 37638982 ~ 37650964 (+) False XLOC_003630
TCONS_00007082 other upstream 779291 37647553 ~ 37650028 (+) True XLOC_003630
TCONS_00007077 other upstream 780216 37638980 ~ 37649103 (+) False XLOC_003630
TCONS_00007081 other upstream 784754 37639239 ~ 37644565 (+) False XLOC_003630
TCONS_00007069 other upstream 1064759 37364446 ~ 37364560 (+) True XLOC_003628
TCONS_00007094 other downstream 130045 38588451 ~ 38588566 (+) True XLOC_003640
TCONS_00007097 other downstream 345205 38803611 ~ 38803738 (+) True XLOC_003642
TCONS_00007127 other downstream 2191065 40649471 ~ 40655871 (+) False XLOC_003667
TCONS_00007131 other downstream 2430774 40889180 ~ 40889294 (+) True XLOC_003670
TCONS_00007137 other downstream 2652263 41110669 ~ 41157928 (+) False XLOC_003675

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_10241081_10252745.mRNA True 1467 mRNA 0.51 9 CI01000306 10241081 ~ 10252864 (+)