RNA id: TCONS_00008658


Basic Information

Item Value
RNA id TCONS_00008658
length 1105
lncRNA type antisense_over
GC content 0.38
exon number 3
gene id XLOC_003643
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 38887882 ~ 38907795 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctgattcattcaggaagGATAACGTTACCCTCCATGCTAACCGCCCTTCGTTTCTGGAATTTTTGTGGCTGGATGAGGAAACTAGACTGAGTAACTTGAGAAATGATGTTAAATacttcatCTGatgttcatcttcatcatctgatgtggagagacctgcttgtctgagcgtagcctttaggaggcggatctcaagtctggccttggtttgctgcagtttggtcagagtcagttgttcctctgccagtcTCTTTTTGCCATTGTTGAAGCTCAGCACCACCTTCAAGATGGGCAGTTTCCAGTGGCACCACGTGGAGGAACGGACTTCGCCACCTATATATACAGGGTTTGGATTATCACTCACCATAAACTACAACTACACACAAAATCACAAGTCAATAAATGATGTCCTCCAACCTTAAATCATATACCACATTAGCAAAACATTAGACTGAAGAAGGTTGTATATGAGGACGATATTAAAGCAAATACTAAACGTAGTAACTTTATTTCTCTTCAGAACTCAACTGAAGATAtttgaatgaaaataatgaagatattttagtcAAATCTGAGAGCTCCTTAATCCTTCATAGACAGTAAGATTCCTGACTATGAGAAAACTTttatgtgcacataaaacaaCATTAACTATTCAACAATTTCttccctcagtgtcagtatagggcacgcGTTCACATGTCGCACCTCTGACATATAACCTTGGATGCGCCTGTGTATTTTTTTAAGAGAGGAAGTCagagaggaagtcgcgcaggcaTCCCGTGGGGTATATGTCACTGCACAGTGCTTGTGAACGCGTGCCCTATAatcacactgaggagaagaaacgttgaataaaaatgtttgttttatgtgaagGCATATGATCtgttttgatgagtttttttGTAGACTTTGAGTCTGGATGAGGGAGCTCTTAGATAaagataaaaattgtaaaaatagttctgaagatgaacatgatgatgaataatgaattacatagcttactttttttaattaattaatctttttttgtttgtttttagaagaATTTCTGGTCAATAACATGGCTAGTTATAGATTTATACTTCAATATagg

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0007492 endoderm development biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043011 myeloid dendritic cell differentiation biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0002030 inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0048513 animal organ development biological_process
GO:0060914 heart formation biological_process
GO:0001773 myeloid dendritic cell activation biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:1904323 regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:1904325 positive regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0051281 positive regulation of release of sequestered calcium ion into cytosol biological_process
GO:0007369 gastrulation biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0010524 positive regulation of calcium ion transport into cytosol biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:1903587 regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:1903589 positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0060026 convergent extension biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0097028 dendritic cell differentiation biological_process
GO:0009790 embryo development biological_process
GO:0001702 gastrulation with mouth forming second biological_process
GO:0003676 nucleic acid binding molecular_function
GO:0060182 apelin receptor activity molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007095 lncRNA upstream 11530 38614476 ~ 38876352 (+) False XLOC_003641
TCONS_00008657 lncRNA upstream 273062 38603734 ~ 38614820 (+) False XLOC_003641
TCONS_00007096 lncRNA upstream 273097 38614535 ~ 38614785 (+) True XLOC_003641
TCONS_00008656 lncRNA upstream 723128 38149888 ~ 38164754 (+) True XLOC_003637
TCONS_00008655 lncRNA upstream 887270 37995066 ~ 38000612 (+) True XLOC_003636
TCONS_00008413 lncRNA downstream 21312 38929107 ~ 38930238 (+) True XLOC_003645
TCONS_00008661 lncRNA downstream 23903 38931698 ~ 38935636 (+) False XLOC_003644
TCONS_00008662 lncRNA downstream 40101 38947896 ~ 38978532 (+) False XLOC_003644
TCONS_00008663 lncRNA downstream 40101 38947896 ~ 39014692 (+) True XLOC_003644
TCONS_00008414 lncRNA downstream 60320 38968115 ~ 38968511 (+) True XLOC_003646
TCONS_00007093 mRNA upstream 429476 38429319 ~ 38458406 (+) True XLOC_003639
TCONS_00007091 mRNA upstream 467063 38280454 ~ 38420819 (+) False XLOC_003638
TCONS_00007092 mRNA upstream 467063 38332419 ~ 38420819 (+) True XLOC_003638
TCONS_00007089 mRNA upstream 963995 37905630 ~ 37923887 (+) False XLOC_003635
TCONS_00007099 mRNA downstream 197224 39105019 ~ 39112255 (+) False XLOC_003648
TCONS_00007100 mRNA downstream 199336 39107131 ~ 39112251 (+) True XLOC_003648
TCONS_00007101 mRNA downstream 212511 39120306 ~ 39148199 (+) False XLOC_003649
TCONS_00007102 mRNA downstream 212537 39120332 ~ 39142081 (+) False XLOC_003649
TCONS_00007103 mRNA downstream 227255 39135050 ~ 39148198 (+) False XLOC_003649
TCONS_00007097 other upstream 84144 38803611 ~ 38803738 (+) True XLOC_003642
TCONS_00007094 other upstream 299316 38588451 ~ 38588566 (+) True XLOC_003640
TCONS_00007079 other upstream 1236918 37638982 ~ 37650964 (+) False XLOC_003630
TCONS_00007082 other upstream 1237854 37647553 ~ 37650028 (+) True XLOC_003630
TCONS_00007077 other upstream 1238779 37638980 ~ 37649103 (+) False XLOC_003630
TCONS_00007127 other downstream 1741676 40649471 ~ 40655871 (+) False XLOC_003667
TCONS_00007131 other downstream 1981385 40889180 ~ 40889294 (+) True XLOC_003670
TCONS_00007137 other downstream 2202874 41110669 ~ 41157928 (+) False XLOC_003675
TCONS_00007139 other downstream 2227814 41135609 ~ 41157926 (+) True XLOC_003675
TCONS_00007149 other downstream 2557312 41465107 ~ 41465236 (+) True XLOC_003680

Expression Profile

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