RNA id: TCONS_00008414


Basic Information

Item Value
RNA id TCONS_00008414
length 397
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id XLOC_003646
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 38968115 ~ 38968511 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

taattctaaaaaactcttttttttcttattggaaATACGTGCTTGAGCCTAAATTTTTTGCGTAAAATACGTTGCTCGCGGTACGTTTCATTGcatgtttcaaatgacaaatccactagagagcgCTGTTGAGCAAAACACAATTGACcattgacaaatccactagagagcgCTGTTGAGCAAAACACAATTGACCATTGTGTTCacaagctcaacagaaatgactgattggccgtgaaggtcattgGTTCACCATTCTTTACCGCTTTTCACCGAGTGCAAACATAGATACACGGATACAGATAAGGTTTCATCGCgtgtttcaaatgacaaatccactagacggctctgtctacatttttgtgaatctgaaatatgttacttgggGAGTTTTGTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008660 lncRNA upstream 19506 38899701 ~ 38948609 (+) False XLOC_003644
TCONS_00008659 lncRNA upstream 19506 38899701 ~ 38948609 (+) False XLOC_003644
TCONS_00008661 lncRNA upstream 32479 38931698 ~ 38935636 (+) False XLOC_003644
TCONS_00008413 lncRNA upstream 37877 38929107 ~ 38930238 (+) True XLOC_003645
TCONS_00008658 lncRNA upstream 60320 38887882 ~ 38907795 (+) True XLOC_003643
TCONS_00007098 lncRNA downstream 109099 39077610 ~ 39083043 (+) True XLOC_003647
TCONS_00008664 lncRNA downstream 179893 39148404 ~ 39151980 (+) True XLOC_003650
TCONS_00008666 lncRNA downstream 219020 39187531 ~ 39206145 (+) False XLOC_003651
TCONS_00008665 lncRNA downstream 219020 39187531 ~ 39206145 (+) False XLOC_003651
TCONS_00008667 lncRNA downstream 219020 39187531 ~ 39260038 (+) False XLOC_003651
TCONS_00007093 mRNA upstream 509709 38429319 ~ 38458406 (+) True XLOC_003639
TCONS_00007091 mRNA upstream 547296 38280454 ~ 38420819 (+) False XLOC_003638
TCONS_00007092 mRNA upstream 547296 38332419 ~ 38420819 (+) True XLOC_003638
TCONS_00007089 mRNA upstream 1044228 37905630 ~ 37923887 (+) False XLOC_003635
TCONS_00007099 mRNA downstream 136508 39105019 ~ 39112255 (+) False XLOC_003648
TCONS_00007100 mRNA downstream 138620 39107131 ~ 39112251 (+) True XLOC_003648
TCONS_00007101 mRNA downstream 151795 39120306 ~ 39148199 (+) False XLOC_003649
TCONS_00007102 mRNA downstream 151821 39120332 ~ 39142081 (+) False XLOC_003649
TCONS_00007103 mRNA downstream 166539 39135050 ~ 39148198 (+) False XLOC_003649
TCONS_00007097 other upstream 164377 38803611 ~ 38803738 (+) True XLOC_003642
TCONS_00007094 other upstream 379549 38588451 ~ 38588566 (+) True XLOC_003640
TCONS_00007079 other upstream 1317151 37638982 ~ 37650964 (+) False XLOC_003630
TCONS_00007127 other downstream 1680960 40649471 ~ 40655871 (+) False XLOC_003667
TCONS_00007131 other downstream 1920669 40889180 ~ 40889294 (+) True XLOC_003670
TCONS_00007137 other downstream 2142158 41110669 ~ 41157928 (+) False XLOC_003675
TCONS_00007139 other downstream 2167098 41135609 ~ 41157926 (+) True XLOC_003675
TCONS_00007149 other downstream 2496596 41465107 ~ 41465236 (+) True XLOC_003680