XLOC_003648 (C11H1orf50)


Basic Information

Item Value
gene id XLOC_003648
gene name C11H1orf50
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 39105019 ~ 39112255 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007099
AGCGCTTTCTCCATGTTGAGGATCACAGCCAGCCAGTCCTGCTTATAATACGCCTCCACCGCGTTGTCGAAGAGCAGGTCGTACGGCTGAAATCCCGCATTGATTTGAGGGTCACACCGGGTGAAGTGGACAGTGGAGAGGATTGAGATGAGGCACAGTGAGGTCCACATCTTGGAGACTACTGGAGGCCTGCGAGGAGGCAACTACACAGCTGCTACTAAAAGCAGGAAACCTAACAGGACCCTAGAAACGCCTCCTCCGTGTCGTGCTAGACTTATGTTACACCGGTGCGGTTCTCGAGTTATTGTGCTGGAAATACTTCAGTAAACATGGATAGAAGTGTCAGTGTGCCACACCAACCGAATAAAACCACTACGGTAACTTTGGTGGAGACCAGCAGTAACCCGAGTGGAATGGTTCTGGTGAGTCCTTACCAGACTAACCGGGTTGGAGATCCTATGGATCTGGTTTCTCTGGCACAGCAAGTGCAGAAGGGAGATGAGTTTATCAGAGCCAACGCCTGCAACAGACTTACAGTCATTGCTGATCAAATAAGATACCTTCAGGAGCAAGCAAGAAAGGTTTTGGAAGATGCTAGGAAAGATGCTGAGCTTCACCACGCTGCCTGCAATGTTGTGAAGAAACCAGGAAACATGTATTATCTTTACATGCGTGAATCGGGACAGCGGTACTTCTCCATTTTGTCTCCACGGGAATGGGGTGCCAGTTGTCCTCACAAGTTTCTTGGCGGATACAAACTCCAACACGACATGTCTTGGACACCTCAGGAAGACGTTGAGAAACGGGACGCTGAAATTGGCATCATGGACAAACTGTTAAATAGACAGACTGCTCTGCCAGCCTGCACAGAGCCCAATTTCGAAGGCCTTTCACAGTGAGAGAACATAGAACACTCATGAACAATCTTAAATAATGACCACCTGGTTTTAAAATATACGAGTTGTTTGTTAATATACAacacaaattaaattcaaattcatTTTTTCAGAA
>TCONS_00007100
ATTGTGCTGGAAATACTTCAGTAAACATGGATAGAAGTGTCAGTGTGCCACACCAACCGAATAAAACCACTACGGTAACTTTGGTGGAGACCAGCAGTAACCCGAGTGGAATGGTTCTGGTGAGTCCTTACCAGACTAACCGGGTTGGAGATCCTATGGATCTGGTTTCTCTGGCACAGCAAGTGCAGAAGGGAGATGAGTTTATCAGAGCCAACGCCTGCAACAGACTTACAGTCATTGCTGATCAAATAAGATACCTTCAGGAGCAAGCAAGAAAGGTTTTGGAAGATGCTAGGAAAGATGCTGAGCTTCACCACGCTGCCTGCAATGTTGTGAAGAAACCAGGAAACATGTATTATCTTTACATGCGTGAATCGGGACAGCGGTACTTCTCCATTTTGTCTCCACGGGAATGGGGTGCCAGTTGTCCTCACAAGTTTCTTGGCGGATACAAACTCCAACACGACATGTCTTGGACACCTCAGGAAGACGTTGAGAAACGGGACGCTGAAATTGGCATCATGGACAAACTGTTAAATAGACAGACTGCTCTGCCAGCCTGCACAGAGCCCAATTTCGAAGGCCTTTCACAGTGAGAGAACATAGAACACTCATGAACAATCTTAAATAATGACCACCTGGTTTTAAAATATACGAGTTGTTTGTTAATATACAacacaaattaaattcaaattcatTTTTTC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000071211

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007099 False 1011 mRNA 0.47 6 39105019 39112255
TCONS_00007100 True 704 mRNA 0.44 5 39107131 39112251

Neighbor

gene id symbol gene type direction distance location
XLOC_003647 CU210919.1 coding upstream 21976 39077610 ~ 39083043 (+)
XLOC_003644 NA coding upstream 90327 38899701 ~ 39014692 (+)
XLOC_003646 NA coding upstream 136508 38968115 ~ 38968511 (+)
XLOC_003645 NA coding upstream 174781 38929107 ~ 38930238 (+)
XLOC_003643 NA coding upstream 197224 38887882 ~ 38907795 (+)
XLOC_003649 cdc42 coding downstream 8051 39120306 ~ 39148199 (+)
XLOC_003650 NA coding downstream 36149 39148404 ~ 39151980 (+)
XLOC_003651 NA coding downstream 75276 39187531 ~ 39280891 (+)
XLOC_003652 NA coding downstream 150281 39262536 ~ 39283976 (+)
XLOC_003653 NA coding downstream 175114 39287369 ~ 39290634 (+)
XLOC_003369 CR854846.2 misc upstream 22981937 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 26393023 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 26410756 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 26419420 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 26424991 12679732 ~ 12680028 (+)
XLOC_003654 NA non-coding downstream 261457 39373712 ~ 39479267 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_10548464_10549530 C21H1ORF50, CLG25H1ORF50, CUNH1ORF50 coding CI01000306 null 10548464 ~ 10549627 (+)