XLOC_003653


Basic Information

Item Value
gene id XLOC_003653
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 39287369 ~ 39290634 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008417
ATCACTTCTGGTCCTACAGATGGAGGCGGTTCTGGGTTTGGCTGCTGACTTACTTGGAAATCCAGCGCTGTAGCTTCAGCTTACACGGGTCGCTCCTGTGGCAGGTTCTCAGTGGTACATACCCCGCGATAAGGAGCTGCAAGGGAACTATTGTTCGGTGAGCCCAGTCTGTCATCAGGGGCTTGTTGAGCAAATACGCCCAGACACCAACATTCCCCAGCGCTGCACAAACAGAAACGCTTTTTTTTCTC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008417 True 251 lncRNA 0.53 2 39287369 39290634

Neighbor

gene id symbol gene type direction distance location
XLOC_003652 NA coding upstream 3393 39262536 ~ 39283976 (+)
XLOC_003651 NA coding upstream 6478 39187531 ~ 39280891 (+)
XLOC_003650 NA coding upstream 135389 39148404 ~ 39151980 (+)
XLOC_003649 cdc42 coding upstream 139170 39120306 ~ 39148199 (+)
XLOC_003648 C11H1orf50 coding upstream 175114 39105019 ~ 39112255 (+)
XLOC_003654 NA coding downstream 83078 39373712 ~ 39479267 (+)
XLOC_003655 NA coding downstream 285907 39576541 ~ 39926872 (+)
XLOC_003656 vamp3 coding downstream 638194 39928828 ~ 39956925 (+)
XLOC_003657 per3 coding downstream 668405 39959039 ~ 40021080 (+)
XLOC_003658 si:dkey-264d12.1 coding downstream 742156 40032790 ~ 40072301 (+)
XLOC_003369 CR854846.2 misc upstream 23164287 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 26575373 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 26593106 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 26601770 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 26607341 12679732 ~ 12680028 (+)
XLOC_003647 CU210919.1 non-coding upstream 204326 39077610 ~ 39083043 (+)
XLOC_003644 NA non-coding upstream 272677 38899701 ~ 39014692 (+)
XLOC_003659 NA non-coding downstream 820847 40111481 ~ 40116646 (+)
XLOC_003662 NA non-coding downstream 929421 40220055 ~ 40434080 (+)
XLOC_003669 NA non-coding downstream 1574321 40864955 ~ 40865542 (+)

Expression


Co-expression Network