XLOC_003659


Basic Information

Item Value
gene id XLOC_003659
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 40111481 ~ 40116646 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008673
GCCCTCCTCTGGATATCCCGTCAGGAATCTGGAGTTGTAGTCATTATGGGGAATCTCCCATCCTCCTCCAACCGGGAGTCTGTCCAGCAGGTGTCGGTGGGGGAACTGGAGCTCTGGAGCCGCTTCTGGAGGACTCAAACTGCCGTCCGGGAACCTGCGGATGACCCCCATCGCCTCCCAGTCCAGCACGCAGTCGGTCGGAGGAGGCGGAGGGCTGGACACAAACTCGCTGATTTCCACTTTGTTTATATTCAGCGGCAGGAGTTTCTTATATATTTTGGGCTCGCTAGTTTGTTTTCCAGTTTTCCAGGCGTCCGGAATTGGAAGTGAAGCGGCGTAAAGAGTCCGAAACTCGCGGTCGAAAGACTCCACAACTGGGCCGCTCATGACGGTGACGAGCTGACGGTGCAGATAGGTGTCACTCCAGGGCTGGTGTGGATTATAATCTTTAAAGCTATGAGCTGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008673 True 465 lncRNA 0.55 2 40111481 40116646

Neighbor

gene id symbol gene type direction distance location
XLOC_003658 si:dkey-264d12.1 coding upstream 39180 40032790 ~ 40072301 (+)
XLOC_003657 per3 coding upstream 90401 39959039 ~ 40021080 (+)
XLOC_003656 vamp3 coding upstream 154556 39928828 ~ 39956925 (+)
XLOC_003655 NA coding upstream 184609 39576541 ~ 39926872 (+)
XLOC_003654 NA coding upstream 632214 39373712 ~ 39479267 (+)
XLOC_003660 si:dkey-264d12.5 coding downstream 31535 40148181 ~ 40168378 (+)
XLOC_003661 si:ch211-193i15.1 coding downstream 91593 40208239 ~ 40215554 (+)
XLOC_003662 NA coding downstream 103409 40220055 ~ 40434080 (+)
XLOC_003663 si:dkey-207b20.2 coding downstream 189933 40306579 ~ 40311746 (+)
XLOC_003664 mmel1 coding downstream 414102 40530748 ~ 40605868 (+)
XLOC_003369 CR854846.2 misc upstream 23988399 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 27399485 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 27417218 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 27425882 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 27431453 12679732 ~ 12680028 (+)
XLOC_003653 NA non-coding upstream 820847 39287369 ~ 39290634 (+)
XLOC_003652 NA non-coding upstream 827505 39262536 ~ 39283976 (+)
XLOC_003651 NA non-coding upstream 830590 39187531 ~ 39280891 (+)
XLOC_003669 NA non-coding downstream 748309 40864955 ~ 40865542 (+)
XLOC_003670 CABZ01044767.1 non-coding downstream 772534 40889180 ~ 40889294 (+)
XLOC_003671 NA non-coding downstream 775035 40891681 ~ 40956123 (+)
XLOC_003672 CABZ01044764.1 non-coding downstream 780680 40897326 ~ 40899889 (+)

Expression


Co-expression Network