RNA id: TCONS_00007100


Basic Information

Item Value
RNA id TCONS_00007100
length 704
RNA type mRNA
GC content 0.44
exon number 5
gene id XLOC_003648
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 39105019 ~ 39112255 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTGTGCTGGAAATACTTCAGTAAACATGGATAGAAGTGTCAGTGTGCCACACCAACCGAATAAAACCACTACGGTAACTTTGGTGGAGACCAGCAGTAACCCGAGTGGAATGGTTCTGGTGAGTCCTTACCAGACTAACCGGGTTGGAGATCCTATGGATCTGGTTTCTCTGGCACAGCAAGTGCAGAAGGGAGATGAGTTTATCAGAGCCAACGCCTGCAACAGACTTACAGTCATTGCTGATCAAATAAGATACCTTCAGGAGCAAGCAAGAAAGGTTTTGGAAGATGCTAGGAAAGATGCTGAGCTTCACCACGCTGCCTGCAATGTTGTGAAGAAACCAGGAAACATGTATTATCTTTACATGCGTGAATCGGGACAGCGGTACTTCTCCATTTTGTCTCCACGGGAATGGGGTGCCAGTTGTCCTCACAAGTTTCTTGGCGGATACAAACTCCAACACGACATGTCTTGGACACCTCAGGAAGACGTTGAGAAACGGGACGCTGAAATTGGCATCATGGACAAACTGTTAAATAGACAGACTGCTCTGCCAGCCTGCACAGAGCCCAATTTCGAAGGCCTTTCACAGTGAGAGAACATAGAACACTCATGAACAATCTTAAATAATGACCACCTGGTTTTAAAATATACGAGTTGTTTGTTAATATACAacacaaattaaattcaaattcatTTTTTC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000105140

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007098 lncRNA upstream 24088 39077610 ~ 39083043 (+) True XLOC_003647
TCONS_00008663 lncRNA upstream 92439 38947896 ~ 39014692 (+) True XLOC_003644
TCONS_00008662 lncRNA upstream 128599 38947896 ~ 38978532 (+) False XLOC_003644
TCONS_00008414 lncRNA upstream 138620 38968115 ~ 38968511 (+) True XLOC_003646
TCONS_00008661 lncRNA upstream 171495 38931698 ~ 38935636 (+) False XLOC_003644
TCONS_00008664 lncRNA downstream 36153 39148404 ~ 39151980 (+) True XLOC_003650
TCONS_00008666 lncRNA downstream 75280 39187531 ~ 39206145 (+) False XLOC_003651
TCONS_00008665 lncRNA downstream 75280 39187531 ~ 39206145 (+) False XLOC_003651
TCONS_00008667 lncRNA downstream 75280 39187531 ~ 39260038 (+) False XLOC_003651
TCONS_00008668 lncRNA downstream 75280 39187531 ~ 39280891 (+) False XLOC_003651
TCONS_00007093 mRNA upstream 648725 38429319 ~ 38458406 (+) True XLOC_003639
TCONS_00007091 mRNA upstream 686312 38280454 ~ 38420819 (+) False XLOC_003638
TCONS_00007092 mRNA upstream 686312 38332419 ~ 38420819 (+) True XLOC_003638
TCONS_00007089 mRNA upstream 1183244 37905630 ~ 37923887 (+) False XLOC_003635
TCONS_00007101 mRNA downstream 8055 39120306 ~ 39148199 (+) False XLOC_003649
TCONS_00007102 mRNA downstream 8081 39120332 ~ 39142081 (+) False XLOC_003649
TCONS_00007103 mRNA downstream 22799 39135050 ~ 39148198 (+) False XLOC_003649
TCONS_00007104 mRNA downstream 22835 39135086 ~ 39141455 (+) True XLOC_003649
TCONS_00007106 mRNA downstream 560623 39672874 ~ 39926872 (+) False XLOC_003655
TCONS_00007097 other upstream 303393 38803611 ~ 38803738 (+) True XLOC_003642
TCONS_00007094 other upstream 518565 38588451 ~ 38588566 (+) True XLOC_003640
TCONS_00007079 other upstream 1456167 37638982 ~ 37650964 (+) False XLOC_003630
TCONS_00007127 other downstream 1537220 40649471 ~ 40655871 (+) False XLOC_003667
TCONS_00007131 other downstream 1776929 40889180 ~ 40889294 (+) True XLOC_003670
TCONS_00007137 other downstream 1998418 41110669 ~ 41157928 (+) False XLOC_003675
TCONS_00007139 other downstream 2023358 41135609 ~ 41157926 (+) True XLOC_003675
TCONS_00007149 other downstream 2352856 41465107 ~ 41465236 (+) True XLOC_003680

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_10548464_10549530.mRNA True 618 mRNA 0.46 4 CI01000306 10548464 ~ 10549627 (+)