RNA id: TCONS_00008666


Basic Information

Item Value
RNA id TCONS_00008666
length 864
lncRNA type antisense_over
GC content 0.41
exon number 4
gene id XLOC_003651
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 39187531 ~ 39280891 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TATGTGATGCGATTTCGGATACAGCCATAGAGAAAGGACCTCATCCATCGATCACAGAAGGCGACATGTTTTCAGAAACAGATGTGTCATTCTTGCACAACTGTCTTCCTGTGATAAACAGCTCTTGTTTCCTCAATACCTCGGTGACTCATTGAAGACTGGATTTGGACCAGATGTGTGAACCACAAAGATACTACAGACTTTCAGAGAGATTAAAAAAGgtTATGATTTCCGCGCGTCCAAAAATACCTCAGAGCGCGTCAAGGCCTTTTAATAATGACTCAGACTGGATGTCTGGCCTCCTGTGGGGACCGAGAGCGCACTTGTTGCCGGTTCTGTCCAGCTCTGCTCTGATTTACTGAGCCTCTGGCCTGTGTGCAATCCCAGACACACAAAAGAGGTGTGATGTGTGATCCCGCAGACGCCACCGATGATACTGAAGCAACAAGAGCAAAACTAAACGCAGCCAAGTAAGGTTTGAACACCAGACAACTGacgtgacacttttttttttttttttacttatgcatTTTATGCTCTCATTTTCCTATTAAACAAATTAGCAGCTATAAAACCACAATCAGTGAAGGTGGACTGGTCAGAGTAAATGTTGAATTGGGAACACATTGAGGCTTTTTGACagtgtcattgatctgcagtgaATTATGATCTGTTTTTGTCAGTCATAACTACATTCAGATTTTCACTGGTAAACAGGTTTGCAGATGTCTGGAGGATCTTTTATACAATGCATTTCTCTCTAAATCTAATTTTGTTTGAAAAAGGTAAATTGTACATTattgacttgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgcagttgaagtaaaaattattagcccc

Function

GO:

id name namespace
GO:0006997 nucleus organization biological_process
GO:0005814 centriole cellular_component
GO:0005635 nuclear envelope cellular_component
GO:0044615 nuclear pore nuclear basket cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008664 lncRNA upstream 35551 39148404 ~ 39151980 (+) True XLOC_003650
TCONS_00007098 lncRNA upstream 104488 39077610 ~ 39083043 (+) True XLOC_003647
TCONS_00008663 lncRNA upstream 172839 38947896 ~ 39014692 (+) True XLOC_003644
TCONS_00008662 lncRNA upstream 208999 38947896 ~ 38978532 (+) False XLOC_003644
TCONS_00008414 lncRNA upstream 219020 38968115 ~ 38968511 (+) True XLOC_003646
TCONS_00008416 lncRNA downstream 56391 39262536 ~ 39283976 (+) True XLOC_003652
TCONS_00008417 lncRNA downstream 81224 39287369 ~ 39290634 (+) True XLOC_003653
TCONS_00008418 lncRNA downstream 167567 39373712 ~ 39479267 (+) False XLOC_003654
TCONS_00008671 lncRNA downstream 167575 39373720 ~ 39377087 (+) True XLOC_003654
TCONS_00008672 lncRNA downstream 370396 39576541 ~ 39814952 (+) False XLOC_003655
TCONS_00007101 mRNA upstream 39332 39120306 ~ 39148199 (+) False XLOC_003649
TCONS_00007103 mRNA upstream 39333 39135050 ~ 39148198 (+) False XLOC_003649
TCONS_00007102 mRNA upstream 45450 39120332 ~ 39142081 (+) False XLOC_003649
TCONS_00007104 mRNA upstream 46076 39135086 ~ 39141455 (+) True XLOC_003649
TCONS_00007099 mRNA upstream 75276 39105019 ~ 39112255 (+) False XLOC_003648
TCONS_00007106 mRNA downstream 466729 39672874 ~ 39926872 (+) False XLOC_003655
TCONS_00007105 mRNA downstream 466729 39672874 ~ 39926872 (+) False XLOC_003655
TCONS_00007107 mRNA downstream 722683 39928828 ~ 39954612 (+) False XLOC_003656
TCONS_00007108 mRNA downstream 722739 39928884 ~ 39953618 (+) False XLOC_003656
TCONS_00007109 mRNA downstream 729009 39935154 ~ 39956925 (+) True XLOC_003656
TCONS_00007097 other upstream 383793 38803611 ~ 38803738 (+) True XLOC_003642
TCONS_00007094 other upstream 598965 38588451 ~ 38588566 (+) True XLOC_003640
TCONS_00007079 other upstream 1536567 37638982 ~ 37650964 (+) False XLOC_003630
TCONS_00007127 other downstream 1443326 40649471 ~ 40655871 (+) False XLOC_003667
TCONS_00007131 other downstream 1683035 40889180 ~ 40889294 (+) True XLOC_003670
TCONS_00007137 other downstream 1904524 41110669 ~ 41157928 (+) False XLOC_003675
TCONS_00007139 other downstream 1929464 41135609 ~ 41157926 (+) True XLOC_003675
TCONS_00007149 other downstream 2258962 41465107 ~ 41465236 (+) True XLOC_003680

Expression Profile

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