RNA id: TCONS_00008416


Basic Information

Item Value
RNA id TCONS_00008416
length 629
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id XLOC_003652
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 39262536 ~ 39283976 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTTGATTCTGACTTTTTTGTACTTGCCTGAATATTATAATTTACTAATATCAGTAaacttcattattttttataactcagTGGCTAACACTGAGTTTTTGGGTGGGCCTGCCACCATCATCTCACATTTCCTTCTGAAACCCAATAGGTCTAATGCATTTCCACCGGTCAGGATAACATAGCATCTCCATGTCCCCTCACGGCGCTTCTGTCTCCACCAGAGACCCGGACGCCACCCAGGACGCTGAAACATCCCCAGGCCACGACTGGAGAGAAGTGTTTGTGGTGCTTCTCCAGCTTCCTTTCTCCTCCTGCTCTTTTCAGcaccccaAAACTGCTGTGTTGAGTTCCGATTCAGACTACTTCCAGACAGAATTAATTAAAGAGGGAAATCCCACTGGCCTGCACAGAAGAGGGATTGAGTGTTTTTGGCCCCCTCCGAGGTACCAGAGGATTAGAAGAGCTCACTCAATGATGAGAGTGTTTCCAAACCTCCAGGTACCTGCGGTGACGGACATACCTGCGGCCGTACGTGTTTTCATTATCTGTGTATATCTGAATGTTGCCCGACTGACCCAGCGCTGCTGATGTAAATAATACAGCATGATGGATAAACTCTTTAACAATCG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008667 lncRNA upstream 2498 39187531 ~ 39260038 (+) False XLOC_003651
TCONS_00008666 lncRNA upstream 56391 39187531 ~ 39206145 (+) False XLOC_003651
TCONS_00008665 lncRNA upstream 56391 39187531 ~ 39206145 (+) False XLOC_003651
TCONS_00008669 lncRNA upstream 56391 39187538 ~ 39206145 (+) False XLOC_003651
TCONS_00008670 lncRNA upstream 56391 39187539 ~ 39206145 (+) False XLOC_003651
TCONS_00008417 lncRNA downstream 3393 39287369 ~ 39290634 (+) True XLOC_003653
TCONS_00008418 lncRNA downstream 89736 39373712 ~ 39479267 (+) False XLOC_003654
TCONS_00008671 lncRNA downstream 89744 39373720 ~ 39377087 (+) True XLOC_003654
TCONS_00008672 lncRNA downstream 292565 39576541 ~ 39814952 (+) False XLOC_003655
TCONS_00008419 lncRNA downstream 625600 39909576 ~ 39922539 (+) True XLOC_003655
TCONS_00007101 mRNA upstream 114337 39120306 ~ 39148199 (+) False XLOC_003649
TCONS_00007103 mRNA upstream 114338 39135050 ~ 39148198 (+) False XLOC_003649
TCONS_00007102 mRNA upstream 120455 39120332 ~ 39142081 (+) False XLOC_003649
TCONS_00007104 mRNA upstream 121081 39135086 ~ 39141455 (+) True XLOC_003649
TCONS_00007099 mRNA upstream 150281 39105019 ~ 39112255 (+) False XLOC_003648
TCONS_00007106 mRNA downstream 388898 39672874 ~ 39926872 (+) False XLOC_003655
TCONS_00007105 mRNA downstream 388898 39672874 ~ 39926872 (+) False XLOC_003655
TCONS_00007107 mRNA downstream 644852 39928828 ~ 39954612 (+) False XLOC_003656
TCONS_00007108 mRNA downstream 644908 39928884 ~ 39953618 (+) False XLOC_003656
TCONS_00007109 mRNA downstream 651178 39935154 ~ 39956925 (+) True XLOC_003656
TCONS_00007097 other upstream 458798 38803611 ~ 38803738 (+) True XLOC_003642
TCONS_00007094 other upstream 673970 38588451 ~ 38588566 (+) True XLOC_003640
TCONS_00007079 other upstream 1611572 37638982 ~ 37650964 (+) False XLOC_003630
TCONS_00007127 other downstream 1365495 40649471 ~ 40655871 (+) False XLOC_003667
TCONS_00007131 other downstream 1605204 40889180 ~ 40889294 (+) True XLOC_003670
TCONS_00007137 other downstream 1826693 41110669 ~ 41157928 (+) False XLOC_003675
TCONS_00007139 other downstream 1851633 41135609 ~ 41157926 (+) True XLOC_003675
TCONS_00007149 other downstream 2181131 41465107 ~ 41465236 (+) True XLOC_003680

Expression Profile

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