RNA id: TCONS_00008671


Basic Information

Item Value
RNA id TCONS_00008671
length 747
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id XLOC_003654
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 39373712 ~ 39479267 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACAGAGCATCTGCCGTTGCGGTTTCCCAGTTTTTTTGAACTCGCCATCTGAACCTTGACCTCCATCATAACCTTGAATCTGTCACAATATCTATATTTAATTGGGTTTTATCATTTGCATATGTAGACCAGAGCAGCTAAACAAACAACCAGCATCCCACTAGCATGAAGCAGACGGATAAACACACACAGGTGTGACAGCTGACCTTAATAAGCCCTCTTGGAGTCTGACCTCCACATCCAGGCCTGTCCTGTGAACACAACTGAGATGGTGCTCCCGACAGCTGTTTTTATATCGGCTCTGAGCTCTGCAATCACGTACATGTGGCTAGCTCGACAGGTGCGCTATGATGTGAACAGGATTCAAGGGCGGCTCATTGGTACGACAGCAAGCGTGTGCTCTTTTGTAAGGGTTCAGGTAGCCAGGGAGGGTTCACCACAGTCGTTTTTGGCAAAGCAACAACATTTTGTCACCATGCATTATTTTAGGAAAATGAAGTGTTAGTACAGTGCAGCCCAGGCCATGTTCCTCTGCTGACTTTATTAATCCAAGAACATCTGTGTTAAAAACCCCACTGATGTCATTCACCATCGTGTTTAATTAAGAGCGGTTAATTGCAGAACTTAAATCAGTGGAGTCCTAAATTATGCTTTCCGACATTGCTGATTATTGCTAATTATGTTTTGAACACAGTTTATCAGATTTGCTGGTTCTGAATGGACATAGTTTCATAGTCAAATAGCAAG

Function

GO:

id name namespace
GO:0034440 lipid oxidation biological_process
GO:0006635 fatty acid beta-oxidation biological_process
GO:0046031 ADP metabolic process biological_process
GO:0006090 pyruvate metabolic process biological_process
GO:0006096 glycolytic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0019359 nicotinamide nucleotide biosynthetic process biological_process
GO:0019363 pyridine nucleotide biosynthetic process biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:0019395 fatty acid oxidation biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0032787 monocarboxylic acid metabolic process biological_process
GO:0016042 lipid catabolic process biological_process
GO:0016052 carbohydrate catabolic process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008417 lncRNA upstream 83086 39287369 ~ 39290634 (+) True XLOC_003653
TCONS_00008416 lncRNA upstream 89744 39262536 ~ 39283976 (+) True XLOC_003652
TCONS_00008669 lncRNA upstream 167575 39187538 ~ 39206145 (+) False XLOC_003651
TCONS_00008672 lncRNA downstream 199454 39576541 ~ 39814952 (+) False XLOC_003655
TCONS_00008419 lncRNA downstream 532489 39909576 ~ 39922539 (+) True XLOC_003655
TCONS_00007112 lncRNA downstream 592217 39969304 ~ 39977128 (+) False XLOC_003657
TCONS_00007113 lncRNA downstream 616910 39993997 ~ 39998798 (+) True XLOC_003657
TCONS_00008673 lncRNA downstream 734394 40111481 ~ 40116646 (+) True XLOC_003659
TCONS_00007101 mRNA upstream 225521 39120306 ~ 39148199 (+) False XLOC_003649
TCONS_00007103 mRNA upstream 225522 39135050 ~ 39148198 (+) False XLOC_003649
TCONS_00007102 mRNA upstream 231639 39120332 ~ 39142081 (+) False XLOC_003649
TCONS_00007104 mRNA upstream 232265 39135086 ~ 39141455 (+) True XLOC_003649
TCONS_00007099 mRNA upstream 261465 39105019 ~ 39112255 (+) False XLOC_003648
TCONS_00007106 mRNA downstream 295787 39672874 ~ 39926872 (+) False XLOC_003655
TCONS_00007105 mRNA downstream 295787 39672874 ~ 39926872 (+) False XLOC_003655
TCONS_00007107 mRNA downstream 551741 39928828 ~ 39954612 (+) False XLOC_003656
TCONS_00007108 mRNA downstream 551797 39928884 ~ 39953618 (+) False XLOC_003656
TCONS_00007109 mRNA downstream 558067 39935154 ~ 39956925 (+) True XLOC_003656
TCONS_00007097 other upstream 569982 38803611 ~ 38803738 (+) True XLOC_003642
TCONS_00007094 other upstream 785154 38588451 ~ 38588566 (+) True XLOC_003640
TCONS_00007079 other upstream 1722756 37638982 ~ 37650964 (+) False XLOC_003630
TCONS_00007127 other downstream 1272384 40649471 ~ 40655871 (+) False XLOC_003667
TCONS_00007131 other downstream 1512093 40889180 ~ 40889294 (+) True XLOC_003670
TCONS_00007137 other downstream 1733582 41110669 ~ 41157928 (+) False XLOC_003675
TCONS_00007139 other downstream 1758522 41135609 ~ 41157926 (+) True XLOC_003675
TCONS_00007149 other downstream 2088020 41465107 ~ 41465236 (+) True XLOC_003680

Expression Profile

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