RNA id: TCONS_00007099


Basic Information

Item Value
RNA id TCONS_00007099
length 1011
RNA type mRNA
GC content 0.47
exon number 6
gene id XLOC_003648
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 39105019 ~ 39112255 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCGCTTTCTCCATGTTGAGGATCACAGCCAGCCAGTCCTGCTTATAATACGCCTCCACCGCGTTGTCGAAGAGCAGGTCGTACGGCTGAAATCCCGCATTGATTTGAGGGTCACACCGGGTGAAGTGGACAGTGGAGAGGATTGAGATGAGGCACAGTGAGGTCCACATCTTGGAGACTACTGGAGGCCTGCGAGGAGGCAACTACACAGCTGCTACTAAAAGCAGGAAACCTAACAGGACCCTAGAAACGCCTCCTCCGTGTCGTGCTAGACTTATGTTACACCGGTGCGGTTCTCGAGTTATTGTGCTGGAAATACTTCAGTAAACATGGATAGAAGTGTCAGTGTGCCACACCAACCGAATAAAACCACTACGGTAACTTTGGTGGAGACCAGCAGTAACCCGAGTGGAATGGTTCTGGTGAGTCCTTACCAGACTAACCGGGTTGGAGATCCTATGGATCTGGTTTCTCTGGCACAGCAAGTGCAGAAGGGAGATGAGTTTATCAGAGCCAACGCCTGCAACAGACTTACAGTCATTGCTGATCAAATAAGATACCTTCAGGAGCAAGCAAGAAAGGTTTTGGAAGATGCTAGGAAAGATGCTGAGCTTCACCACGCTGCCTGCAATGTTGTGAAGAAACCAGGAAACATGTATTATCTTTACATGCGTGAATCGGGACAGCGGTACTTCTCCATTTTGTCTCCACGGGAATGGGGTGCCAGTTGTCCTCACAAGTTTCTTGGCGGATACAAACTCCAACACGACATGTCTTGGACACCTCAGGAAGACGTTGAGAAACGGGACGCTGAAATTGGCATCATGGACAAACTGTTAAATAGACAGACTGCTCTGCCAGCCTGCACAGAGCCCAATTTCGAAGGCCTTTCACAGTGAGAGAACATAGAACACTCATGAACAATCTTAAATAATGACCACCTGGTTTTAAAATATACGAGTTGTTTGTTAATATACAacacaaattaaattcaaattcatTTTTTCAGAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000157285

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007098 lncRNA upstream 21976 39077610 ~ 39083043 (+) True XLOC_003647
TCONS_00008663 lncRNA upstream 90327 38947896 ~ 39014692 (+) True XLOC_003644
TCONS_00008662 lncRNA upstream 126487 38947896 ~ 38978532 (+) False XLOC_003644
TCONS_00008414 lncRNA upstream 136508 38968115 ~ 38968511 (+) True XLOC_003646
TCONS_00008660 lncRNA upstream 156410 38899701 ~ 38948609 (+) False XLOC_003644
TCONS_00008664 lncRNA downstream 36149 39148404 ~ 39151980 (+) True XLOC_003650
TCONS_00008666 lncRNA downstream 75276 39187531 ~ 39206145 (+) False XLOC_003651
TCONS_00008665 lncRNA downstream 75276 39187531 ~ 39206145 (+) False XLOC_003651
TCONS_00008667 lncRNA downstream 75276 39187531 ~ 39260038 (+) False XLOC_003651
TCONS_00008668 lncRNA downstream 75276 39187531 ~ 39280891 (+) False XLOC_003651
TCONS_00007093 mRNA upstream 646613 38429319 ~ 38458406 (+) True XLOC_003639
TCONS_00007091 mRNA upstream 684200 38280454 ~ 38420819 (+) False XLOC_003638
TCONS_00007092 mRNA upstream 684200 38332419 ~ 38420819 (+) True XLOC_003638
TCONS_00007089 mRNA upstream 1181132 37905630 ~ 37923887 (+) False XLOC_003635
TCONS_00007090 mRNA upstream 1184435 37909654 ~ 37920584 (+) True XLOC_003635
TCONS_00007101 mRNA downstream 8051 39120306 ~ 39148199 (+) False XLOC_003649
TCONS_00007102 mRNA downstream 8077 39120332 ~ 39142081 (+) False XLOC_003649
TCONS_00007103 mRNA downstream 22795 39135050 ~ 39148198 (+) False XLOC_003649
TCONS_00007104 mRNA downstream 22831 39135086 ~ 39141455 (+) True XLOC_003649
TCONS_00007106 mRNA downstream 560619 39672874 ~ 39926872 (+) False XLOC_003655
TCONS_00007097 other upstream 301281 38803611 ~ 38803738 (+) True XLOC_003642
TCONS_00007094 other upstream 516453 38588451 ~ 38588566 (+) True XLOC_003640
TCONS_00007079 other upstream 1454055 37638982 ~ 37650964 (+) False XLOC_003630
TCONS_00007082 other upstream 1454991 37647553 ~ 37650028 (+) True XLOC_003630
TCONS_00007077 other upstream 1455916 37638980 ~ 37649103 (+) False XLOC_003630
TCONS_00007127 other downstream 1537216 40649471 ~ 40655871 (+) False XLOC_003667
TCONS_00007131 other downstream 1776925 40889180 ~ 40889294 (+) True XLOC_003670
TCONS_00007137 other downstream 1998414 41110669 ~ 41157928 (+) False XLOC_003675
TCONS_00007139 other downstream 2023354 41135609 ~ 41157926 (+) True XLOC_003675
TCONS_00007149 other downstream 2352852 41465107 ~ 41465236 (+) True XLOC_003680

Expression Profile

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