RNA id: TCONS_00008659


Basic Information

Item Value
RNA id TCONS_00008659
length 566
lncRNA type read_through
GC content 0.49
exon number 6
gene id XLOC_003644
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 38899701 ~ 39014692 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGACGGTCGAATCTTTCTTCTTGACCTGAGACGGTGGATTTGATGGTTCTTTCTCTCAGGAAGAGAGCAATAACTCCGAGTACGGATGCAGAGGAAATATACACGGAGAATGTGATGCAACTGAGAGAAGAACAAACCACCCAAGTAGGGAAGAGCGGGGTAAACAGACTCAAGCGCATGGAGAACATTAGAAACTGGACACATATACCACATCCACAGTAGACATCTTCAGGGATTTTCATcgcttgtttttattttcagaagcaatgaagCATGTCGCAGCTCCCCGCCGGTGTAGTACAAGGATCCAGCGACGGGCAAAGCAAGCTCAGAGGAGGGTAAACATCGGGCGGgatccagaggaaaaaaaagccTTCATCACACGCATCCGGTCCGGCGCACAATTACCACTCTGTCCATCATGGGGTCTCATCACCGGAGGCTTTTTTCTCACCCGCCCGCAGACGCATTTATTCTCCTCCTGGCCTGTCTGTGTATTCAGCCTCGACAGCTGCAAATAGACAACAGTTATCCAGATGAGACGGAGAAGGTGTCATGGGAAGGA

Function

GO:

id name namespace
GO:0034587 piRNA metabolic process biological_process
GO:1990511 piRNA biosynthetic process biological_process
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0012505 endomembrane system cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007095 lncRNA upstream 23349 38614476 ~ 38876352 (+) False XLOC_003641
TCONS_00008657 lncRNA upstream 284881 38603734 ~ 38614820 (+) False XLOC_003641
TCONS_00007096 lncRNA upstream 284916 38614535 ~ 38614785 (+) True XLOC_003641
TCONS_00008656 lncRNA upstream 734947 38149888 ~ 38164754 (+) True XLOC_003637
TCONS_00008655 lncRNA upstream 899089 37995066 ~ 38000612 (+) True XLOC_003636
TCONS_00008414 lncRNA downstream 19506 38968115 ~ 38968511 (+) True XLOC_003646
TCONS_00007098 lncRNA downstream 129001 39077610 ~ 39083043 (+) True XLOC_003647
TCONS_00008664 lncRNA downstream 199795 39148404 ~ 39151980 (+) True XLOC_003650
TCONS_00008666 lncRNA downstream 238922 39187531 ~ 39206145 (+) False XLOC_003651
TCONS_00008665 lncRNA downstream 238922 39187531 ~ 39206145 (+) False XLOC_003651
TCONS_00007093 mRNA upstream 441295 38429319 ~ 38458406 (+) True XLOC_003639
TCONS_00007091 mRNA upstream 478882 38280454 ~ 38420819 (+) False XLOC_003638
TCONS_00007092 mRNA upstream 478882 38332419 ~ 38420819 (+) True XLOC_003638
TCONS_00007089 mRNA upstream 975814 37905630 ~ 37923887 (+) False XLOC_003635
TCONS_00007099 mRNA downstream 156410 39105019 ~ 39112255 (+) False XLOC_003648
TCONS_00007100 mRNA downstream 158522 39107131 ~ 39112251 (+) True XLOC_003648
TCONS_00007101 mRNA downstream 171697 39120306 ~ 39148199 (+) False XLOC_003649
TCONS_00007102 mRNA downstream 171723 39120332 ~ 39142081 (+) False XLOC_003649
TCONS_00007103 mRNA downstream 186441 39135050 ~ 39148198 (+) False XLOC_003649
TCONS_00007097 other upstream 95963 38803611 ~ 38803738 (+) True XLOC_003642
TCONS_00007094 other upstream 311135 38588451 ~ 38588566 (+) True XLOC_003640
TCONS_00007079 other upstream 1248737 37638982 ~ 37650964 (+) False XLOC_003630
TCONS_00007127 other downstream 1700862 40649471 ~ 40655871 (+) False XLOC_003667
TCONS_00007131 other downstream 1940571 40889180 ~ 40889294 (+) True XLOC_003670
TCONS_00007137 other downstream 2162060 41110669 ~ 41157928 (+) False XLOC_003675
TCONS_00007139 other downstream 2187000 41135609 ~ 41157926 (+) True XLOC_003675
TCONS_00007149 other downstream 2516498 41465107 ~ 41465236 (+) True XLOC_003680

Expression Profile

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