RNA id: TCONS_00007096


Basic Information

Item Value
RNA id TCONS_00007096
length 175
lncRNA type lincRNA
GC content 0.46
exon number 2
gene id XLOC_003641
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 38603734 ~ 38876352 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gcttttcaCAAAAATTAGTTGGAGATCAAGCAATAATTGGCAGACCCCCTGCAGTATGGCTGCGGACCCCCTGTCGAAGTCCCCGAAGATTATAGAGATGAAAACAAAGCCGTTACTGTAGAGGATTCACGACAAGAGACCTGCATGTGGACTCTTATCACTTATCAAAGCCTGT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000156378

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008656 lncRNA upstream 449781 38149888 ~ 38164754 (+) True XLOC_003637
TCONS_00008655 lncRNA upstream 613923 37995066 ~ 38000612 (+) True XLOC_003636
TCONS_00008654 lncRNA upstream 765824 37841257 ~ 37848711 (+) False XLOC_003634
TCONS_00008653 lncRNA upstream 765824 37841257 ~ 37848711 (+) True XLOC_003634
TCONS_00007074 lncRNA upstream 980505 37631780 ~ 37634030 (+) True XLOC_003629
TCONS_00008658 lncRNA downstream 273097 38887882 ~ 38907795 (+) True XLOC_003643
TCONS_00008660 lncRNA downstream 284916 38899701 ~ 38948609 (+) False XLOC_003644
TCONS_00008659 lncRNA downstream 284916 38899701 ~ 38948609 (+) False XLOC_003644
TCONS_00008413 lncRNA downstream 314322 38929107 ~ 38930238 (+) True XLOC_003645
TCONS_00008661 lncRNA downstream 316913 38931698 ~ 38935636 (+) False XLOC_003644
TCONS_00007093 mRNA upstream 156129 38429319 ~ 38458406 (+) True XLOC_003639
TCONS_00007091 mRNA upstream 193716 38280454 ~ 38420819 (+) False XLOC_003638
TCONS_00007092 mRNA upstream 193716 38332419 ~ 38420819 (+) True XLOC_003638
TCONS_00007089 mRNA upstream 690648 37905630 ~ 37923887 (+) False XLOC_003635
TCONS_00007099 mRNA downstream 490234 39105019 ~ 39112255 (+) False XLOC_003648
TCONS_00007100 mRNA downstream 492346 39107131 ~ 39112251 (+) True XLOC_003648
TCONS_00007101 mRNA downstream 505521 39120306 ~ 39148199 (+) False XLOC_003649
TCONS_00007102 mRNA downstream 505547 39120332 ~ 39142081 (+) False XLOC_003649
TCONS_00007103 mRNA downstream 520265 39135050 ~ 39148198 (+) False XLOC_003649
TCONS_00007094 other upstream 25969 38588451 ~ 38588566 (+) True XLOC_003640
TCONS_00007079 other upstream 963571 37638982 ~ 37650964 (+) False XLOC_003630
TCONS_00007082 other upstream 964507 37647553 ~ 37650028 (+) True XLOC_003630
TCONS_00007077 other upstream 965432 37638980 ~ 37649103 (+) False XLOC_003630
TCONS_00007097 other downstream 188826 38803611 ~ 38803738 (+) True XLOC_003642
TCONS_00007127 other downstream 2034686 40649471 ~ 40655871 (+) False XLOC_003667
TCONS_00007131 other downstream 2274395 40889180 ~ 40889294 (+) True XLOC_003670
TCONS_00007137 other downstream 2495884 41110669 ~ 41157928 (+) False XLOC_003675
TCONS_00007139 other downstream 2520824 41135609 ~ 41157926 (+) True XLOC_003675

Expression Profile

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