RNA id: TCONS_00007074


Basic Information

Item Value
RNA id TCONS_00007074
length 353
lncRNA type lincRNA
GC content 0.45
exon number 4
gene id XLOC_003629
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 37612214 ~ 37634030 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCAGTGGATGTGTCTGGTTGCTGTAGACTACACAATGTGGATTCTTCTAGCTGGGTTTGTGGTTCTGGTGTGTGCTGCAGATGCCACACCAGTTCTTGGCAGAACATTTCCTGATTTTGGAAAGATGTATAATGTCAAAGGTGTGGTGTCTTTGCCTCATTCTGAGATAAAGGAGCCGTTTGAAGCTTGGTACGATCTTGATGGGAACAGAAGTCGCATTGACTATCGTAATAGCACAGTGCGCACCTTTCAGATTGGAAATGACTTGGATTTTGATTGCAAAGGTACTCAGCGTGAGGTCTGGAAAACCATCACAGAGGCTGGCCATAAGAAGAACACATACTGTCTGTGGG

Function

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0070828 heterochromatin organization biological_process
GO:0000786 nucleosome cellular_component
GO:0005694 chromosome cellular_component
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000172365

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007065 lncRNA upstream 372117 37256303 ~ 37259663 (+) False XLOC_003627
TCONS_00007056 lncRNA upstream 461342 37169813 ~ 37170438 (+) True XLOC_003623
TCONS_00008651 lncRNA upstream 493938 37136800 ~ 37137842 (+) False XLOC_003623
TCONS_00008652 lncRNA upstream 493938 37137076 ~ 37137842 (+) False XLOC_003623
TCONS_00007052 lncRNA upstream 531631 37096519 ~ 37100149 (+) False XLOC_003622
TCONS_00008654 lncRNA downstream 207227 37841257 ~ 37848711 (+) False XLOC_003634
TCONS_00008653 lncRNA downstream 207227 37841257 ~ 37848711 (+) True XLOC_003634
TCONS_00008655 lncRNA downstream 361036 37995066 ~ 38000612 (+) True XLOC_003636
TCONS_00008656 lncRNA downstream 515858 38149888 ~ 38164754 (+) True XLOC_003637
TCONS_00008657 lncRNA downstream 969704 38603734 ~ 38614820 (+) False XLOC_003641
TCONS_00007070 mRNA upstream 66 37612214 ~ 37631714 (+) False XLOC_003629
TCONS_00007071 mRNA upstream 2487 37612237 ~ 37629293 (+) False XLOC_003629
TCONS_00007072 mRNA upstream 17261 37612672 ~ 37614519 (+) False XLOC_003629
TCONS_00007067 mRNA upstream 332842 37275448 ~ 37298938 (+) False XLOC_003627
TCONS_00007068 mRNA upstream 338896 37278457 ~ 37292884 (+) True XLOC_003627
TCONS_00007076 mRNA downstream 4843 37638873 ~ 37651879 (+) False XLOC_003630
TCONS_00007075 mRNA downstream 4843 37638873 ~ 37651879 (+) False XLOC_003630
TCONS_00007078 mRNA downstream 4950 37638980 ~ 37650966 (+) False XLOC_003630
TCONS_00007080 mRNA downstream 4996 37639026 ~ 37647124 (+) False XLOC_003630
TCONS_00007083 mRNA downstream 18840 37652870 ~ 37677206 (+) True XLOC_003631
TCONS_00007069 other upstream 267220 37364446 ~ 37364560 (+) True XLOC_003628
TCONS_00007061 other upstream 417557 37214108 ~ 37214223 (+) True XLOC_003626
TCONS_00007048 other upstream 636972 36994694 ~ 36994808 (+) True XLOC_003620
TCONS_00007036 other upstream 1049408 36582258 ~ 36582372 (+) True XLOC_003609
TCONS_00007022 other upstream 1245956 36379348 ~ 36385824 (+) True XLOC_003599
TCONS_00007077 other downstream 4950 37638980 ~ 37649103 (+) False XLOC_003630
TCONS_00007079 other downstream 4952 37638982 ~ 37650964 (+) False XLOC_003630
TCONS_00007081 other downstream 5209 37639239 ~ 37644565 (+) False XLOC_003630
TCONS_00007082 other downstream 13523 37647553 ~ 37650028 (+) True XLOC_003630
TCONS_00007094 other downstream 954421 38588451 ~ 38588566 (+) True XLOC_003640