RNA id: TCONS_00007072


Basic Information

Item Value
RNA id TCONS_00007072
length 681
RNA type mRNA
GC content 0.48
exon number 4
gene id XLOC_003629
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 37612214 ~ 37634030 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCACACCTTAACAGTTAGACGTATGTGTGGAGCAAATAAACAATGAGATTGTAGCTCCTTTCTTGCTAATTTGCTGTGCCTTCACGTCCAGCCTGTGTTTGTCGCCGTGCTTTCCTATGCACGAGCTTCCCTTTGCTAAACAGAGGTCATGCCGTACATTTTAGGTGTTTAAATCAGTGAATAATAATGCTGTGATTTTGTAAATTAATCTCTGTAAGCTCCCCAGTACAATGAATTAACCTAGTGAACAATGCAGGTAAGAATCATGCCTATTCGCCGCTCAGCTGCAGCCCCACCCAAAGAGGAGGCACCCCCTGCAAATGCCCCTGATGGAGATGCTCCCGCTGAAGGATCTGCATCTGCAGGTGAGAAGGAGAACGAGAAAAACTCGCCTTCTAAACCCGAAAACACGGAGGACAAGAAAGCCGGAGGAGATGGAGAGGAGGCGACTGCTGATGGAGAGGAGCAGGCCAAAGATGGAGAGGCCGGAGAGGGAGAGAAATCTGACGAAGCAGCTGCTGAACAAGGGAAGGGCAAGAAGAAAAGAGGAAAGGATGCAGCTAAACTTGACAAGGAAGGTGATGACAAAGGGAAGAAGGTGAAAAAGAAGAAGATTCCTGCTTGGGCGACCATTGCTGCCAACAAACTGGGTTCAACCTCACTTTCCCAACCCAAAGTTG

Function

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0070828 heterochromatin organization biological_process
GO:0000786 nucleosome cellular_component
GO:0005694 chromosome cellular_component
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060810-79 Predicted to enable DNA binding activity and nucleosome binding activity. Predicted to be involved in heterochromatin organization. Predicted to act upstream of or within nucleosome assembly and regulation of transcription, DNA-templated. Predicted to be part of nucleosome. Predicted to be active in chromosome and nucleus. Orthologous to human HP1BP3 (heterochromatin protein 1 binding protein 3).

Ensembl:

ensembl_id ENSDART00000157993

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007065 lncRNA upstream 353009 37256303 ~ 37259663 (+) False XLOC_003627
TCONS_00007056 lncRNA upstream 442234 37169813 ~ 37170438 (+) True XLOC_003623
TCONS_00008651 lncRNA upstream 474830 37136800 ~ 37137842 (+) False XLOC_003623
TCONS_00008652 lncRNA upstream 474830 37137076 ~ 37137842 (+) False XLOC_003623
TCONS_00007052 lncRNA upstream 512523 37096519 ~ 37100149 (+) False XLOC_003622
TCONS_00007073 lncRNA downstream 17195 37631714 ~ 37634030 (+) False XLOC_003629
TCONS_00007074 lncRNA downstream 17261 37631780 ~ 37634030 (+) True XLOC_003629
TCONS_00008654 lncRNA downstream 226738 37841257 ~ 37848711 (+) False XLOC_003634
TCONS_00008653 lncRNA downstream 226738 37841257 ~ 37848711 (+) True XLOC_003634
TCONS_00008655 lncRNA downstream 380547 37995066 ~ 38000612 (+) True XLOC_003636
TCONS_00007067 mRNA upstream 313734 37275448 ~ 37298938 (+) False XLOC_003627
TCONS_00007068 mRNA upstream 319788 37278457 ~ 37292884 (+) True XLOC_003627
TCONS_00007066 mRNA upstream 336882 37265692 ~ 37275790 (+) False XLOC_003627
TCONS_00007063 mRNA upstream 337443 37250839 ~ 37275229 (+) False XLOC_003627
TCONS_00007064 mRNA upstream 358984 37251825 ~ 37253688 (+) False XLOC_003627
TCONS_00007076 mRNA downstream 24354 37638873 ~ 37651879 (+) False XLOC_003630
TCONS_00007075 mRNA downstream 24354 37638873 ~ 37651879 (+) False XLOC_003630
TCONS_00007078 mRNA downstream 24461 37638980 ~ 37650966 (+) False XLOC_003630
TCONS_00007080 mRNA downstream 24507 37639026 ~ 37647124 (+) False XLOC_003630
TCONS_00007083 mRNA downstream 38351 37652870 ~ 37677206 (+) True XLOC_003631
TCONS_00007069 other upstream 248112 37364446 ~ 37364560 (+) True XLOC_003628
TCONS_00007061 other upstream 398449 37214108 ~ 37214223 (+) True XLOC_003626
TCONS_00007048 other upstream 617864 36994694 ~ 36994808 (+) True XLOC_003620
TCONS_00007036 other upstream 1030300 36582258 ~ 36582372 (+) True XLOC_003609
TCONS_00007022 other upstream 1226848 36379348 ~ 36385824 (+) True XLOC_003599
TCONS_00007077 other downstream 24461 37638980 ~ 37649103 (+) False XLOC_003630
TCONS_00007079 other downstream 24463 37638982 ~ 37650964 (+) False XLOC_003630
TCONS_00007081 other downstream 24720 37639239 ~ 37644565 (+) False XLOC_003630
TCONS_00007082 other downstream 33034 37647553 ~ 37650028 (+) True XLOC_003630
TCONS_00007094 other downstream 973932 38588451 ~ 38588566 (+) True XLOC_003640

Expression Profile

//