RNA id: TCONS_00007066


Basic Information

Item Value
RNA id TCONS_00007066
length 3482
RNA type mRNA
GC content 0.38
exon number 6
gene id XLOC_003627
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 37250839 ~ 37298938 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAAAACAAATGACAACGAGCCAATGCTGAGCTGGAATTTAACATCGCCCTGCAGGATCAGCCCTGAGCTGTGGCCGTGTCTCCTGCAGGCGGATGGAGTATGCAAAGAAGTTAAAGGATTCAGGCAGAAGTGCTGTAACACCTGGACAGAAAACAGCACTAAACTATggGCATCCGGGACGTTCGTGAACATCCCATCTGAAAATCAGCAGCCTCTCTGCATAATGCTTAAAGTGGATGAAGAGATTATGCAGTACTGTCAACATCCCTTGGAGCGGCAGTACTGGAGTCTTCTTCTCCTCCTGCCGCTGATCGGTGTTTGTCTGACTGTTGTTGGAGGACTTCTGCTGGTGAACAAAATCAAATGGTCTCTGAGCGAATGGGACAGATGTTACTCTCAAGATACACGAGGACAGGTGTTATTGCTCCATTCCCCTGCCACCAACTCACAGCTGGTGCGTAAAATAGGCCAGTTGCTTTCTGAGCTGGGTTTTAGAGTATTTCTTGACTTATGGAATCCAGCAGAACTGGGCTCATGTGGTCCGACAGCGTGGCTTCATTCTAAGCTCGATCACATCAAGAAACATGGAGGAAAAGCTCTACTTCTTCTTTCTCAATCAACACTACAGAGAGCTGACTTGTTCTGGGATGCTGCAGTGGAAAGACAAAACAATCCGGAAGCAAACTGCTCAGATACTTTAGCTTCGGCTCTTGGCTGCATTTTTGCTGACCGCCAGAAGGGCGGCGCCGTGCAGCGGTTCATTCTTGTGCAGATAGACTCTCCTGAACTGCTCGTCAATGAGGAGAATGACTTGCCAAAACTGTTGAGAGGCCTGCCGCTCTATAAACTGCCCTCACAGGCTCAGGGATTATTAACAGAACTTTGTTTGGAGAAACCAAATAATGTGAACGAGAAGCTGAAGAAGATGTGGTGGATGAAAAGGGCACAAAGAAAGTTGGCTACAGGAATGCAGAACTTTTGGAAAATGACAAGAGTGAGAACTGAATCCATGAACACCCAGACTGATTCACTTAGTGTCGACATGGAAGACACAGAGGAGAGAGTTTGTCTCAGACATGAACTGCACTGACATGCTGTTTGTATGgactattattacattatatgaataatactcaTGTCCACAAAGATACTACATCTAAAAAAATGTTGATGGTGTGCTTTACTAGGCATAAATGTCAatttacaggttttttttatgtatggttTAGTGGCTCCATAGGAATGCCACTTAGATGTTATGCAAGCAAAGACTTACTTAGTATGTACACGACCTGAAGTAGGTCTGTATGGGAAATGTTTACATGCGGAAATTGAAAAGTGCAGACACTGCAGGAGGAACTTTAGACTAAAGAGGTAAAGACTTCAAATTCCAAGATGCGAATTCCAGTGTTAGGTTCGAATTCCTTTGTTGGGtaaagttacttgtaaaagtAATATGTTACAATCTCGAGtaactttaaaaatgtgtctAAATAAGGGAAACAGTGTGAAAGTATGTGTTTTGTGGTTATTATTGTGgttagattttgtgttatttgtgcatttttaaattgtaatgtaaTGAAAGTTTGTAATATATTAGTATagtatactgtacattatattcattctgcttagtccctttatttattaggggtcgcttCTTGGTTTGAGGAGACAGTGCTTCTGAGCCACGTCTattataaattacttttaaaagtaactttacccaacaCCGTCCAAGCAATATACATAGTTATACTGTTCACATGCAATAGTAATATATGTATATAGCCATCTCATTATATTTCCATATGTATTACTATTAGGAAAGGGTTGACTTACCATTTGCAAGtctgcattttaatttaatagttgTAAATCATTCGCTCTCCTTTAGTTAAACGTAAATTCTTTTGTGAAATGGTGTATATTTTTCTAAACTAAACATATATAATGTGCAATAGTGTGGTTGTAtgcaaatgtacagtttatttacACTTATCAATGTCAATGTTAATGATGTCAATGGTGTTGTGTCATAGGGTGACCAGTGAAATATAGAATATAGCTGGCCAAAGTGAACTTTCTATCTAAACATAACTAAGACACTTTTGTGTGCTGGTATTGTTTATGCTTATCTTAACAATACGGGAATACTGACCCCCTTAAATCTATAATGATGTTCAAATGTAGAAATCTTTTGACTGCCACCTCATCTGGTTAGAGCTCTTGAAATTGTCTTATGACACTGACCAGCAAACCATCAGACTAGTCACAATTACAGTCTATAAAAAGAAGTTTAAGAAGGGGGCAGGGTAAAAAAATACTGTACACCAGACCCACTGCTATAAATAAGCTCTGTTATCTGAGAAGCGCAGTATGACCTCAGCTGACTGAAGTAAACTAAGAATTGAGGTTGGTTtgatattcacacattcagactttctccttaatcatataatttcagaaaagtattcactGCAAATTCTAAAGAGTggtcatattagcagccaatgactatcaaagtacagcacaTTGAATAGTGCTAAGTCATACTTACATGCAAGTTCAGTCAGAATAGTTAATGTAGTAAACAATGTATAGAGCTGctaaacgaatgtgtgaatataaaatctTTACCTCAATACAGAAAAAGACCCGGGGGGCGAAAAATTGTCTTATACTAATCAGGTACAATGGtgataaatatattgtatttaactGCTGTGTATTTTTAACAAACTATATGTTAAATAAGTTACAGCTATAAAAACGTTGGTTCATACGTGTGTCATGTGGTATGTGTATTTTCGCTGTCAGAGGATTTTTAAGAGTTAAACTTGTGAAGATTTTTTTGGGTTGTTTGTTTTTCGGCTACAGAAATGTGTAACGAAAATATTAAAACGGTTAAAACTCATACCTGTTTCTCCAGCACGACAAAACGAGTTTGGCTAAACTACTATGGCGAAGACgcattttaatatttatgagCTACAAGTTATCTTTAAAATACTGTCACTGTACGTCACGAGTACCTCGTTAATATTCACGAGCGTTAGCCTACCATTGGACGTGGAGAAATGAATATTCAATATTCATGACGCACGCCTTCGCCATAGCAGGATCTGTAATTTCCCGTCAAACGGCGCTCAGAGAAATCTCTGCTGGGTGTGTTTTTGCGCGAAACGCGAACTGTTTTTATTGACCTCATCACTTTCGCCTGTTTGTAAGTATTTAAAGTACTAACTGCATGCTGAACCTTCCAAAACTTTGTAGCCATTAACTAACTTTTACGTGTTTTGTTGAACTAAACTGGCTATAATGttataaacacaaacatatttaCTATTTTAGATTAAAGATATAAACCCTCTCCTAATCTTTACGAAAATAAACCAATAACCAAATCATCTACAAACGTCACAAAACATTATATTCACTGTAACCCGAATGAGTAATGTTTACTTTAGAAACGTT

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0030368 interleukin-17 receptor activity molecular_function

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction
ko04657 IL-17 signaling pathway
ko04050 Cytokine receptors

ZFIN:

id description
ZDB-GENE-120111-3 Predicted to enable interleukin-17 receptor activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in chronic mucocutaneous candidiasis. Orthologous to human IL17RC (interleukin 17 receptor C).

Ensembl:

ensembl_id ENSDART00000184691

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007065 lncRNA upstream 6029 37256303 ~ 37259663 (+) False XLOC_003627
TCONS_00007056 lncRNA upstream 95254 37169813 ~ 37170438 (+) True XLOC_003623
TCONS_00008651 lncRNA upstream 127850 37136800 ~ 37137842 (+) False XLOC_003623
TCONS_00008652 lncRNA upstream 127850 37137076 ~ 37137842 (+) False XLOC_003623
TCONS_00007052 lncRNA upstream 165543 37096519 ~ 37100149 (+) False XLOC_003622
TCONS_00007073 lncRNA downstream 355924 37631714 ~ 37634030 (+) False XLOC_003629
TCONS_00007074 lncRNA downstream 355990 37631780 ~ 37634030 (+) True XLOC_003629
TCONS_00008654 lncRNA downstream 565467 37841257 ~ 37848711 (+) False XLOC_003634
TCONS_00008653 lncRNA downstream 565467 37841257 ~ 37848711 (+) True XLOC_003634
TCONS_00008655 lncRNA downstream 719276 37995066 ~ 38000612 (+) True XLOC_003636
TCONS_00007064 mRNA upstream 12004 37251825 ~ 37253688 (+) False XLOC_003627
TCONS_00007059 mRNA upstream 36159 37201489 ~ 37229533 (+) False XLOC_003625
TCONS_00007058 mRNA upstream 36473 37201483 ~ 37229219 (+) False XLOC_003625
TCONS_00007060 mRNA upstream 36594 37201501 ~ 37229098 (+) False XLOC_003625
TCONS_00007062 mRNA upstream 41924 37216668 ~ 37223768 (+) True XLOC_003625
TCONS_00007068 mRNA downstream 2667 37278457 ~ 37292884 (+) True XLOC_003627
TCONS_00007070 mRNA downstream 336424 37612214 ~ 37631714 (+) False XLOC_003629
TCONS_00007071 mRNA downstream 336447 37612237 ~ 37629293 (+) False XLOC_003629
TCONS_00007072 mRNA downstream 336882 37612672 ~ 37614519 (+) False XLOC_003629
TCONS_00007076 mRNA downstream 363083 37638873 ~ 37651879 (+) False XLOC_003630
TCONS_00007061 other upstream 51469 37214108 ~ 37214223 (+) True XLOC_003626
TCONS_00007048 other upstream 270884 36994694 ~ 36994808 (+) True XLOC_003620
TCONS_00007036 other upstream 683320 36582258 ~ 36582372 (+) True XLOC_003609
TCONS_00007022 other upstream 879868 36379348 ~ 36385824 (+) True XLOC_003599
TCONS_00007020 other upstream 896500 36355363 ~ 36369192 (+) True XLOC_003598
TCONS_00007069 other downstream 88656 37364446 ~ 37364560 (+) True XLOC_003628
TCONS_00007077 other downstream 363190 37638980 ~ 37649103 (+) False XLOC_003630
TCONS_00007079 other downstream 363192 37638982 ~ 37650964 (+) False XLOC_003630
TCONS_00007081 other downstream 363449 37639239 ~ 37644565 (+) False XLOC_003630
TCONS_00007082 other downstream 371763 37647553 ~ 37650028 (+) True XLOC_003630

Expression Profile

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