RNA id: TCONS_00007064


Basic Information

Item Value
RNA id TCONS_00007064
length 521
RNA type mRNA
GC content 0.44
exon number 2
gene id XLOC_003627
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 37250839 ~ 37298938 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTCGCACAGACACACCTGAGCCTCGTGCGTACGTCAGGTGACTTTACCGGACACAAATCTACTTTTCATGTTGGACCAGGagctgaaatgatatattaaaGAGCTGAAGAGTTTATATCTGTAGATATTAAGGTCGTTTTCTGTTTACTCTCCTCAGGTAACCGGGACATTATGCTGCATTGCTGCGGGTTTTCGCGCTTCCTGCTCGGCGAGACTCGAGTAATAACCGGACTGAAGATTTGGACTTTGTATCCGAACTGATCAACAATGGTCCGTTCTGGTCCAGTTAAAGGATATACAACGAAGTATATATAATCTACAGGATTTTGTTGTGAAGTAGTTTCGGTTAAACGCTTGTTGGACAGCGAAACTGTTACGTAATGGATTTGACGTCGTTTATATCGAAGCTGCTTTTATTGGCCGGTACCTGTGTGTGTTCAATGGAGCGGGTCACACACAGGCCAGAAAACAACATCACCTGTCCTCAGACTCTTTTAAACTGCACATTGAAACGCACAGA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0030368 interleukin-17 receptor activity molecular_function

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction
ko04657 IL-17 signaling pathway
ko04050 Cytokine receptors

ZFIN:

id description
ZDB-GENE-120111-3 Predicted to enable interleukin-17 receptor activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in chronic mucocutaneous candidiasis. Orthologous to human IL17RC (interleukin 17 receptor C).

Ensembl:

ensembl_id ENSDART00000169804

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007056 lncRNA upstream 81387 37169813 ~ 37170438 (+) True XLOC_003623
TCONS_00008651 lncRNA upstream 113983 37136800 ~ 37137842 (+) False XLOC_003623
TCONS_00008652 lncRNA upstream 113983 37137076 ~ 37137842 (+) False XLOC_003623
TCONS_00007052 lncRNA upstream 151676 37096519 ~ 37100149 (+) False XLOC_003622
TCONS_00007041 lncRNA upstream 593186 36657025 ~ 36658639 (+) True XLOC_003614
TCONS_00007065 lncRNA downstream 2615 37256303 ~ 37259663 (+) False XLOC_003627
TCONS_00007073 lncRNA downstream 378026 37631714 ~ 37634030 (+) False XLOC_003629
TCONS_00007074 lncRNA downstream 378092 37631780 ~ 37634030 (+) True XLOC_003629
TCONS_00008654 lncRNA downstream 587569 37841257 ~ 37848711 (+) False XLOC_003634
TCONS_00008653 lncRNA downstream 587569 37841257 ~ 37848711 (+) True XLOC_003634
TCONS_00007059 mRNA upstream 22292 37201489 ~ 37229533 (+) False XLOC_003625
TCONS_00007058 mRNA upstream 22606 37201483 ~ 37229219 (+) False XLOC_003625
TCONS_00007060 mRNA upstream 22727 37201501 ~ 37229098 (+) False XLOC_003625
TCONS_00007062 mRNA upstream 28057 37216668 ~ 37223768 (+) True XLOC_003625
TCONS_00007057 mRNA upstream 51625 37178271 ~ 37200200 (+) True XLOC_003624
TCONS_00007066 mRNA downstream 12004 37265692 ~ 37275790 (+) False XLOC_003627
TCONS_00007067 mRNA downstream 21760 37275448 ~ 37298938 (+) False XLOC_003627
TCONS_00007068 mRNA downstream 24769 37278457 ~ 37292884 (+) True XLOC_003627
TCONS_00007070 mRNA downstream 358526 37612214 ~ 37631714 (+) False XLOC_003629
TCONS_00007071 mRNA downstream 358549 37612237 ~ 37629293 (+) False XLOC_003629
TCONS_00007061 other upstream 37602 37214108 ~ 37214223 (+) True XLOC_003626
TCONS_00007048 other upstream 257017 36994694 ~ 36994808 (+) True XLOC_003620
TCONS_00007036 other upstream 669453 36582258 ~ 36582372 (+) True XLOC_003609
TCONS_00007022 other upstream 866001 36379348 ~ 36385824 (+) True XLOC_003599
TCONS_00007020 other upstream 882633 36355363 ~ 36369192 (+) True XLOC_003598
TCONS_00007069 other downstream 110758 37364446 ~ 37364560 (+) True XLOC_003628
TCONS_00007077 other downstream 385292 37638980 ~ 37649103 (+) False XLOC_003630
TCONS_00007079 other downstream 385294 37638982 ~ 37650964 (+) False XLOC_003630
TCONS_00007081 other downstream 385551 37639239 ~ 37644565 (+) False XLOC_003630
TCONS_00007082 other downstream 393865 37647553 ~ 37650028 (+) True XLOC_003630

Expression Profile

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