RNA id: TCONS_00007060


Basic Information

Item Value
RNA id TCONS_00007060
length 2748
RNA type mRNA
GC content 0.45
exon number 25
gene id XLOC_003625
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 37201483 ~ 37229533 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGATCGAGTTGCTTTCAGACTGATTCTCTTTGGTGCTTTTCTCATCTCAGCCACTTCAGCTCCTGTTGAGAAGAAACAAAATGTGGATATATACAGTTTCTATATTAACTCCACGGTGTCCAGTCGCTACGCCACAACAATCATCACAAGCCGTGTGGCAAATAAACTGAGTGAGCCTCAAGAGATCCAGTTTGAGGTCAAGATTCCCAAGAATGCCTTCATCAGCAAGTTCAGAATGATCATTGAGGGGAAGACATATGATGGAGTTGTGAAGAAAAAAGAGGAAGCTCAGCAGCAATACAATAAAGCAGTGTCTCGAGGAGAAAGCGCTGGACTGATCAAATCTGTTGGACGGACTTTGGAGGACTTTAAAACATCAGTGACAGTGGCTGCAAACAGTAAAGTAACCTTTGAGTTGACCTACGAGGAACTTTTAAAGCGCCGTCTTGGCAAATATGAGCTGCTCATCAACGCCCAACCAATGCAGCCGGTGGCGGACTTCAAaATAGATGTGCACATTCAAGAGAGTCCAGGAATTTCCTTCTTGGAGGTGAAAGGAGATTTGAACACCGGTGATCTGGCCAGCGCTGTCAAAACTAAAAGAGCAGATAAAGATgCGTGGGTGACCTTCTATCCCACTCGAGACCAACAGACCAAGTGTACAAACTGTGCAGAAAATGGGCTGAACGGAGATTTGATAATAACATATGATGTCAACAGAGGAAATCCTAAAGGAGAAGTACAGATATCGAATGGCTACTTCGTCCACTACTTTGCACCTTCTGATGTTCCACGTATTCCCAAAAATGTGGTGTTTATCATTGACCGGAGTGGCTCAATGCACGGCAGAAAAATACGTCAGACTCGTTCGGCACTGTTGACGATTTTGAATGATCTAGATGAGGATGACCACTTTGGATTGATCACCTTTGACGCTGAAATTGACTTTTGGAAACGGGAACTCCTTCAAGCTACCAAGGCAAACCGGGAGAACGCAGAATCTTTTGTGAAACGGATCCAAGATAGAGGAGCCACAAACATAAATGATGCCGTTCTAGCAGGAGTGGACATGATCAATCGAAATCCACGAAAAGGAACAGCCTCCATCCTGATCCTGTTGACTGATGGAGATCCCACTGCAGGTGAAACCAACATAGAGAAGATAATGGCCAATGTGAAAGAGGCAATTGGGTCAAAGTTTCCCCTCTATTGTCTTGGTTTTGGATACGATGTTAACTTTGACTTCCTGACAAAGATGTCACTTGAAAATAATGCAGTTGCTCGCAGGATTTACGAGGATTCAGACGCTGATATACAGCTTCAGggctTCTATGATGAAGTTGCCGTCCCTCTCCTCACTGATATTCAGCTTAGCTACGCAGGAGGGAAACACCTTACCAAGTCCAGCTTTGGCCTGTACTTCAATGGCTCTGAGATTGTGGTGTCAGGACAAATTACAGACAACAGTGTGGAGACTTTCACAACTGAAGTCATCGCAGTTTCAAAAGGCAATAATGTGATGTATCAAGACACTGTAATGATGAAAGACGCCAGTGACGTCAAACCCGAGAATGAAGATTTCATGCAGCGACTTTGGGCCTACCTTACAGTGAAGCAGCTCCTGGAAAGACAGGTGCTTCTCAAAGGAAAAGAGCAAGAGGATGAAAAGGAACAAGCTCTTCAACTCTCCCTGAAATACCAGTTTGTCACTCCTCTTACCTCTATGGTTGTTACTAAGCCACAGGAAGGTGAAGTGGATGTTGCAGACAAACCCAAAGAGGGTGGAGAATCACCCAGATATCCAGCAAGTCAACCCCGTCTGGTACCTTATGGTCGAAGTGGAACACCAGGATTTAGTCACCACCACTATACCACTAACTCGGGTCAACCTGGTTTGCATGCTCTACCTGGACTGCCTGGTCCACCTGGTCCACCCGATGCAAGTATCAGTTATGGAAGATTTTCTGGTGGATCACATCGCGCGTTTCTTCAGGAAGGTTTTTTCGACCAACATGATGTTGTTGCTCATAGTGATCTTTTATTGAGTTCTGCTGTGATATTGCCCACACATATGCCAAGGAGAACTTTGCCAAAGGCTACAAGTGTTGCTGGTCTTGTGCCAGTTAGTCGGTTCCTACTTCCTGCTGTTGGTCAGTCTAAGCCGCTTTGTTTTGACGTTCCTGTTCCAAACAAACTCAAACTCTTAGAAGATTCAGCTTCAGAGTTCTCTATGAATGGAGAGTCCACACATAGGCACAATGGATTCCGAAGGATTGCTTTACATTACAAATCAAACCATGACCTGGTAATAGACAAAAGGTCTATTAAATATAACGACGGCCAGAATAATGTCGAGTTCTTATGGGACCAGGAACTGACCCAACACAACGCAGAGGGTGTGTCTCTGATTCTGCAAAGCAATGAACTGGACATTACCATGGGAAATATCCGCATTGTGGTTCTTCTTCACAAGATAAATGGTCAGGTGTTTCTGTGGCCTGCTGTTCGACAACAACCAAAAGATGTCGTTTTGGCAGGGATTTTAGGGAAATCTGATGCTTCATATGATGAGATTCAAGGATCACAACCGCCGAGTTTGAAGATAAATAACCAGGAAGTGAAGGCAGACTTGGAGGATGTCAAAGACTACAGGCTTCTTTCAGCTCCGGTTATCAGATGTTGGCTGGTCTCGTTCCAGGCTGTGATGAAGGGAGATGTTTCTGATTTCACTGTCACTAAGATGTAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000171273

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007056 lncRNA upstream 31063 37169813 ~ 37170438 (+) True XLOC_003623
TCONS_00008651 lncRNA upstream 63659 37136800 ~ 37137842 (+) False XLOC_003623
TCONS_00008652 lncRNA upstream 63659 37137076 ~ 37137842 (+) False XLOC_003623
TCONS_00007052 lncRNA upstream 101352 37096519 ~ 37100149 (+) False XLOC_003622
TCONS_00007041 lncRNA upstream 542862 36657025 ~ 36658639 (+) True XLOC_003614
TCONS_00007065 lncRNA downstream 27205 37256303 ~ 37259663 (+) False XLOC_003627
TCONS_00007073 lncRNA downstream 402616 37631714 ~ 37634030 (+) False XLOC_003629
TCONS_00007074 lncRNA downstream 402682 37631780 ~ 37634030 (+) True XLOC_003629
TCONS_00008654 lncRNA downstream 612159 37841257 ~ 37848711 (+) False XLOC_003634
TCONS_00008653 lncRNA downstream 612159 37841257 ~ 37848711 (+) True XLOC_003634
TCONS_00007057 mRNA upstream 1301 37178271 ~ 37200200 (+) True XLOC_003624
TCONS_00007054 mRNA upstream 31063 37137196 ~ 37170438 (+) False XLOC_003623
TCONS_00007055 mRNA upstream 45858 37144328 ~ 37155643 (+) False XLOC_003623
TCONS_00007051 mRNA upstream 99514 37095165 ~ 37101987 (+) False XLOC_003622
TCONS_00007063 mRNA downstream 21741 37250839 ~ 37275229 (+) False XLOC_003627
TCONS_00007064 mRNA downstream 22727 37251825 ~ 37253688 (+) False XLOC_003627
TCONS_00007066 mRNA downstream 36594 37265692 ~ 37275790 (+) False XLOC_003627
TCONS_00007067 mRNA downstream 46350 37275448 ~ 37298938 (+) False XLOC_003627
TCONS_00007068 mRNA downstream 49359 37278457 ~ 37292884 (+) True XLOC_003627
TCONS_00007048 other upstream 206693 36994694 ~ 36994808 (+) True XLOC_003620
TCONS_00007036 other upstream 619129 36582258 ~ 36582372 (+) True XLOC_003609
TCONS_00007022 other upstream 815677 36379348 ~ 36385824 (+) True XLOC_003599
TCONS_00007020 other upstream 832309 36355363 ~ 36369192 (+) True XLOC_003598
TCONS_00007007 other upstream 2107779 35093605 ~ 35093722 (+) True XLOC_003588
TCONS_00007069 other downstream 135348 37364446 ~ 37364560 (+) True XLOC_003628
TCONS_00007077 other downstream 409882 37638980 ~ 37649103 (+) False XLOC_003630
TCONS_00007079 other downstream 409884 37638982 ~ 37650964 (+) False XLOC_003630
TCONS_00007081 other downstream 410141 37639239 ~ 37644565 (+) False XLOC_003630
TCONS_00007082 other downstream 418455 37647553 ~ 37650028 (+) True XLOC_003630

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_09628418_09641286.mRNA True 2604 mRNA 0.41 14 CI01000306 9627821 ~ 9641286 (-)