RNA id: TCONS_00007055


Basic Information

Item Value
RNA id TCONS_00007055
length 1926
RNA type mRNA
GC content 0.48
exon number 8
gene id XLOC_003623
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 37136800 ~ 37170438 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atggaaaacctgacTGGATCCAGCGCTGAGCAGCAGCCTGTGGGCTCCACAGGTCCTTCTGTTCCCTCAAAAAAGACTGTAATTTATGAAAATGGTCATGCACATCCCACTCATACAGACCCTGCAGCTGCAGCACACAGAGGGGCCAGCGATCCAACTGCATACCCCCTATCAGATTACCGAGGCCTGGTCCGGCAGAGATTTATACGCAGAAGTTTGTGGTTCTCTGAGTCAGAGGATCAAGAACTCGAGGTTGCAGAGTGCGACATCACCAGCAGCCCTGTTAAAAGTGCACATATCGCCATCCAGAGGAGCTTTAACAAGGAGAGTCAAGTGGGACAGGCAGACGGTACAAACGAGAACTTGAGCAAAGAGCCAGAGACAAGTGAGACCGAGGAAAAGCAAGATGCTGAGCAGGCTGAAGCTGCGGGGAAAGCTGGGAGTGATGAGAACGAGGAAGAGGCTGAAATGAAGGCGGTTTCCACTTCTCCAGGTGGACGCTTTCTTAAGTTTGATATTGAGCTTGGCAGAGGCTCCTTCAAAACTGTTTATAAGGGCCTGGACACTGAGACCTGGGTGGAGGTGGCCTGGTGTGAACTTCAGGACCGAAAACTTTCCAAAGCAGAACGTCAGAGGTTTAAAGAGGAGGCAGAGATGCTAAAAGGCCTTCAGCATCCCAACATTGTGCGCTTCTATGACTTTTGGGAATCTCCTCTCAAAGGAAAGAAGTGCATTGTTTTAGTCACTGAACTGATGACATCTGGAACCCTGAAAACGTATCTAAAGCGATTTAAGGTGATGAAACCTAAAGTTTTAAGAAGTTGGTGCAGACAGATCTTAAAAGGTCTTCACTTCCTCCATACGAGGACTCCTCCTATTATCCACCGGGACCTGAAGTGTGACAATATCTTCATCACTGGTCCTACAGGCTCAGTCAAGATTGGAGATCTTGGCCTGGCCACACTAAAGAGAGCTTCCTTTGCCAAAAGTGTAATAGGCACACCAGAATTTATGGCCCCTGAGATGTACGAGGAGCACTACGATGAAGCTGTAGATGTATATGCATTTGGGATGTGCATGCTAGAAATGGCCACATCTGAATATCCATACTCAGAGTGCCAAAATGCAGCACAAATATATCGCAAAGTCACTAGCGGTGTGAAGCCAGCCAGTTTCTGTAAGGTGGCTGTgcctgaaataaaagaaatcattGGAGAGTGTATTTGCCATCGCTGGGAGGAAAGGTACTCCATAAAGGACTTACTAAACCATGCATTTTTTGCTGAAGACACTGGGGTGAGAGTAGAGCTGGCTGAAGAGGATGATGGCAAAAAGTCTTCCATCGCTCTGAGGCTTTGGGTTGAAGACCAGAAGAAACTCAAGGGGAAATATAAAGACAGTGGTGCTATTGAGTTCAGCTTTGACCTGGAGACAGAAGTCCCGGAGTCAATCGCCCAGGAAATGGTGGACTCTGGCTTCTTTTTAGAGATTGATGTGAAGATTGTGAGTAAGTCTATCCGTGACCGGGTGTCTCTAATAAAGTGGAGACGACAACGGATTGTCTCAGGATGTAATGGAAAAACCGAAGAGTGCAGCACCAAGACTGAGACACAGCATCTCCTTCAGGTGCCCTCCACGGGGCCACCAGTCGACCATTTGTTCCATGGAGCCCAGCAACAACCTAGTCCTCGGCAACCCCAGGGAACCCAACAACAACAACCTAGTGCCCCACTGCACCAGGCTGCACAAGCACATGGATTGATGTCTCAAGCACCCCAGCAACAACCCACCGTTCAACTGCACCAGCAATATCAGCAGGCAACTCATCAGCTACATCAAGGGGCTTTTCAGCAATCCTCAGTACATCTGCATCAGAGCGCCTACCAGCAGTCACCTGTAAGTTTATTCCTAAATCATTGCAGTTAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-160114-3 Predicted to enable chloride channel inhibitor activity; potassium channel inhibitor activity; and protein serine/threonine kinase activity. Predicted to be involved in several processes, including intracellular signal transduction; protein phosphorylation; and regulation of metal ion transport. Predicted to be active in cytosol. Orthologous to human WNK2 (WNK lysine deficient protein kinase 2).

Ensembl:

ensembl_id ENSDART00000162830

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008651 lncRNA upstream 6486 37136800 ~ 37137842 (+) False XLOC_003623
TCONS_00008652 lncRNA upstream 6486 37137076 ~ 37137842 (+) False XLOC_003623
TCONS_00007052 lncRNA upstream 44179 37096519 ~ 37100149 (+) False XLOC_003622
TCONS_00007041 lncRNA upstream 485689 36657025 ~ 36658639 (+) True XLOC_003614
TCONS_00007040 lncRNA upstream 487563 36653213 ~ 36656765 (+) True XLOC_003613
TCONS_00007056 lncRNA downstream 14170 37169813 ~ 37170438 (+) True XLOC_003623
TCONS_00007065 lncRNA downstream 100660 37256303 ~ 37259663 (+) False XLOC_003627
TCONS_00007073 lncRNA downstream 476071 37631714 ~ 37634030 (+) False XLOC_003629
TCONS_00007074 lncRNA downstream 476137 37631780 ~ 37634030 (+) True XLOC_003629
TCONS_00008654 lncRNA downstream 685614 37841257 ~ 37848711 (+) False XLOC_003634
TCONS_00007051 mRNA upstream 42341 37095165 ~ 37101987 (+) False XLOC_003622
TCONS_00007053 mRNA upstream 44209 37096520 ~ 37100119 (+) True XLOC_003622
TCONS_00007050 mRNA upstream 55394 37049347 ~ 37088934 (+) True XLOC_003621
TCONS_00007049 mRNA upstream 60027 37049105 ~ 37084301 (+) False XLOC_003621
TCONS_00007047 mRNA upstream 108493 36989696 ~ 37035835 (+) True XLOC_003619
TCONS_00007057 mRNA downstream 22628 37178271 ~ 37200200 (+) True XLOC_003624
TCONS_00007058 mRNA downstream 45840 37201483 ~ 37229219 (+) False XLOC_003625
TCONS_00007059 mRNA downstream 45846 37201489 ~ 37229533 (+) False XLOC_003625
TCONS_00007060 mRNA downstream 45858 37201501 ~ 37229098 (+) False XLOC_003625
TCONS_00007062 mRNA downstream 61025 37216668 ~ 37223768 (+) True XLOC_003625
TCONS_00007048 other upstream 149520 36994694 ~ 36994808 (+) True XLOC_003620
TCONS_00007036 other upstream 561956 36582258 ~ 36582372 (+) True XLOC_003609
TCONS_00007022 other upstream 758504 36379348 ~ 36385824 (+) True XLOC_003599
TCONS_00007020 other upstream 775136 36355363 ~ 36369192 (+) True XLOC_003598
TCONS_00007007 other upstream 2050606 35093605 ~ 35093722 (+) True XLOC_003588
TCONS_00007061 other downstream 58465 37214108 ~ 37214223 (+) True XLOC_003626
TCONS_00007069 other downstream 208803 37364446 ~ 37364560 (+) True XLOC_003628
TCONS_00007077 other downstream 483337 37638980 ~ 37649103 (+) False XLOC_003630
TCONS_00007079 other downstream 483339 37638982 ~ 37650964 (+) False XLOC_003630
TCONS_00007081 other downstream 483596 37639239 ~ 37644565 (+) False XLOC_003630

Expression Profile

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