RNA id: TCONS_00007087


Basic Information

Item Value
RNA id TCONS_00007087
length 5510
RNA type mRNA
GC content 0.43
exon number 14
gene id XLOC_003633
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 37768298 ~ 37831776 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGAAACAGCAGGTCCCCATAAACACAGCATCTCTTGAAGGGTTTCCAGCGTTTTTCCCTCTGCCCAGGGAAACCCGGAGAGAAAGAGCTTTCCCTTTAAGAGGGAGGTGAATGACAGGCGGCAGGAGcgagaatgttggaaactgaacACCAGAAAGTCATTGTGGACTGAAGGGAGGCTGGATCGCGTTCATCAGCTGTGCGCTCCGGGTCTCGGTCTGCTCCTGCTGTCAGCTTTTCACAGGCAGAGAAGCGTATGTTATTACTCGCTGAGGGAAAACCACATTTTGCATGCGGCGTTATCGGCTCTGCAGGCCCACAGAAGCACGGGAAGACTGGAGGAATAAAGTTTGGGGAGCGCACGGGTCTTTTGGAGTTGAATGTGTGAGCCCAGTCCACCTGCTTTACATCCCCATGCCAAGGGCAATGTGACCATGGTTGGTGTTGGTATCAAGCTTGAAGACGATGAGTCGGGAGGTCGAATAGTCAATCGGGAATCCCAGCAGTCCTCTCCGCTCTCCGATTGGTCGGCTCGACTGCCCTCCGACAGAGATGACTCTGAGAAGTCAGCGAATGTTCATGCACAATCTCCTTTGGAGCGTTCTCCGAGTAAAGACCTGCTACTGTCACACTCTCCTGCCAGTCAAGATGGAGGCGGCAGAGCCCATGATAAGATTGAGAGCAAACCTAATGTCAATGAGGTGATGCCCACTATTGAAAAGCTTCTGAATACAGACTGGAAAGAAAAGTTCCTTGGGAAGGGTCTTCAAGGCAATGTCAACCTAAAAGGAACCCCAGAGAGTTTGGCAGAGAAAGAGCTTCAGTTGTTGCTGATGATAAACCAGCTCTCTGGTCTGCGCGAGCAGCTGTTAGGAGCTCATTCAGAGCAGAGGAACATGGCAGCTCTTCTGCTGGAGAAACAGCAGCAACAGATGGAACTGGCAAGACAGCAGCAAGAACAGATtgcaaagcagcagcagcagctcataCAGCAGCAACATAAAATCAACTTGCTGCAGCAGCAGATTCAGCAGGTAAACATGCCATATGTTATGATCCCTGCCTTTCACCCCAATGCCCAGCCATTGCCGGTCACCTCTGAAGCCCAGATGGGTTTACCTCTGCAGCCCATTCCCTGCAAACCAGTGGAATACCCCATGCAGTTGCTGCCCAATCCACACTCCACCCCTGTCAAAAGGTCCAGTGGTACAGTCTATCGCCAGGACACCAGCCAACCTCTCAACCTCACCGCTAAACCCAAGACCCCAAGTCCTCAGGCTCTGGAACTGGCACATTTGCAGTCAGGGTATCGACACAGAGATTTGCCCCAAAGCCCTCCTCGATCTGCTCTCAGCCTGAGCTTCTTGGGAGAGGGTGATGTTGTGACACAAGCCATTCATGATGCCCAGCAGCTGTTGCGTGGAGGACAGAGCTCAACGGGCCGAGAGAGGGACAACAACACAAGGCTGGAGGCATCTCGAGACCGGATGGATGATGGTCATAGTCGGACAAATGAAGACCACCACAGCAGTGATTCTGAGGGGCAGATGGCAATCTCTGGGGTGGGAAGCTTTGGTGAATCCCGAACTCCCTCTTCTGGCCACATCAAACGTCCCATGAACGCCTTCATGGTGTGGGCCAAAGACGAAAGGCGACGTATCCTGCAGGCGTTCCCTGACATGCACAACTCCAGTATCAGCAAGATCCTCGGTTCCCGGTGGAAGTCCATGTCCAATCAGGAGAAGCAGCCGTACTATGAGGAGCAGGCCAGATTGAGTCGGCAACACCTGGAACGTTACCCAGATTACAAATACAAACCAAGGCCAAAGCGCACCTGTATTGTAGAGGGTAGACGACTGCGGGTGGGAGAGTACAAGGCCATGATGAAGAGCCGAAGACAGGAGCAACGAGTATCATACCCTCCAAGTCAATCAGAGCAGCAGTTGCCGTACCCACCCAGTGAAGGACAGTACCCTACCACACCTGTGTCCATGAGCACCCTGCCCCTGCACCCTGCCCTCCTGGAGCACTACCTGCCACGGGGTCTGGAGCCTCCGCAGGGTCGAGTCAGCGAGACGAGGGAGAGCGCCAGGCCAAGACAACCCTACAGTGAAGGAGAGGAGAGCGACGCTGGAGAACGCAGTGAAGGAGAGCTCGTCGTCCTCACCGACTGAGAAGAAACAACAGAAAAACCATTGGAGGACAGATAATAACGGTGGTGTCCAAATAATGGTGTAGCTCAGTGTTTTCCAGTCCAGTTATGAAGCTGTCCTTGCAAGCAGGTTTTAACTCTACCTGATAGGTCATTTTCAGATTGTAAGGAAGACAGAAGGCACGTATAGAGCTTAATTTTGGGCATGTTTAGACCAGGCATCTATGAAATGTCTTGATTATAGTCTGCAGAACTTTTTCAGTCTGCATTATTCACTGTATTTGCGTCAGATCTTTCAGAACTGTGGCGCAGAGTAGTTTTTAATTCATTGAATGCCACTGCGCTTATCATGAAGTAAATggctaacactttagtttaggtcacaattcatggtattaacaaaccattcgCTAACGCTACTAGCTTAATGAACTGCTAATTAGCTATTTATTAATAGTTGGTAGGGttgaagttgggtttaggtttaaggtaggattagggatgcagaatctGATCATCCTTGACCCTTTTGTGGGATGTAAACAAAatcaatggtcccaacgtatttcctgttttacatttttaatttctatagcctccgaaaatccaaaaagagccacacattgataaataatgctatgatagctgtttaacattaagttatgatggaattgccttttgttacagttatgaaacatAGGGCTGGACGATTAAACGAAAAGTAATCAACATTCAGAATCTATAAACGATAAATTTTTTCAACTACTTTCCGTGTGTAAAGTCACAGAACCCTACTCTGTTAACACTTCAGTGTTGAGCACAGAATATTGTCTGTTACAGCCGTCACGCGGTCGTATACCCTTCGCCGTGACTGATGCCGACGCTgagctctcaaaaaaatgtaacccaTGTTGCCAGATATTGCTGACGTTTTCCAGCCCAAAAGCGGTCCAAAACTcaccaaaacacacaaaaaacccaaaatattagattattatttaatttaattttaatttatttaaatcaaaatgaaCCTAGTTACTTTACTGTCATGTTTTTTAACCttacagcaaccaacaccagcagtcacagaaccacaacataagCGGATCACTTTGAAACACTTATGTTAGAGGATGTTTTACTTTCATCCTATTCGgcgtttgaattttttttaacataattatgTGCTGCTTGTCGATCAGACaacatttctttgtttgttcttgctgtcaattgtggaaaaaaatgatcgataaaagtgtcatgataaaGCGCTGCGAGTTTAACTGCAGGCGCTGTGTCATGCTCATGCATGCGAACGGGAGTGAGATTTGTccgggagtcagattttgatacagcACACCACCTCTTGCGGGTGGGCCCACACGATTTGtgctatgcactggtcactactaactgaatggagCAGCGCACAGTTATATTTTGTTGTATAAGTTGCATATAAAAGTTGCTtttcaaaaccgcccaaattATGTCAACCCACCTATGCTATTTTTTACACGCACCggccaatctggcaacactgaatgTAACTGCACGTCGCGACGATGCATAGCGGAAGCTCTATGATTTGGTCAGCTTGGTAACGTTGATGAGTGTGGACGGCAGTGAgtgggcaaaaaataaataaaagaatcatTCAATAATCATTTTAagagttaaaatgttcagttaatcgaaatttagattttaggccaaatcgcccagccctaatgaaatagtttgacaacgagcaggaaatgttcatgggccaataacatgaccacattgaaatggtctcaAACAGCTGTCCAAACTccatcctggagggctggtgtcctgcatattttagttccaaccccaattaaacacacctgaacaagctaatcaagctctttctatgtATACAAGAATCATCAAGGAAGGTGTGTTAAaagaggttggagctaaactatgcaggacagcggccctctgggacagagtttggacacccctgatctataactactaatgaacagttaacatCTCTATAGTTggtaggtaataagccagtagttcaTTGATTGAGTGGTGACCCAAACCAAAGTGTTACCAAGTAAATGTTATTCACGAAGTATATAAGAAACAGCTCTTCTAAAAGGGGTACAGACAAGTGTATTCACTGTTGTCTTATTCCAAGTTTCACATTTTTCATTGTGACGAATGATTGGTGATAATAGAAAAgaacagttcacccagaaatgagatctctctttttttatttggtttaactGTTTCTTTAAGTAGCCAATGCATGGAAAGCTCCAAATCGTTagccatagaaaaaaaaaaatgaaagcttcTGTGTATTATTATGCTGTGTCACCAGGGTTTTCCTGCAAAGTTTCCTGTTAAGACTGTGCCAAGGtactttccagagctcaaggcctgagcaaattaaaaaaaggaaaacgaGTGGACTTGAGGGGAAAAAAGGAAGGAACATTGCTGAACTCCTTGTCCAGTTTATATTATCTAGATATCAGATAATGAGGATTAGAGGCTGTTGTGTTAGATTGAAGCAGCCGCCCCTTTAGGACTTTAAGAGATGGACTGCTGGCGTCCTCTGCTGTTTGAGTCTGGGTACTGCACTTAAAATGTTTTCCCTAGGTCAATCTAAATTTTTTATTTGGTGCAAAATAATCACTCGAAATGCACTTTTATCATCTAATATATATACACTTTCAGACCCTAATAACACAGAACTTTTTTCAAAGTAGAATTTTGCACTTGATGTACATATGCAAATGATTTCTACTATTTACTTTGCGAAAGATATGTGAATAATGCCCTTTAAATTTCTCCCTTTTTTAATCTTTTGGTTTACTTTTCTATTTTAGTGTGTTTGTATATAAGAGTGagtttgtgttggaaaaaaaattgtaggaaaaaaaaaaaaacccttgagTTATCATTCCAGCAGTTCTTTTGACTGGGTCCATTTTATTGGGCTGCTGTCATTTTACGGTTGAGCtgaaatgtaaacattttgttAAACTATAAACatctatattttgaagaaaacgaTTTTAGAAATTTGCAAGTGAGTGGACTTTTGTGAAAAACTTGgaagaaaattataaaaatgtaaataacaggATACAAAATACAGATTGCATTTTATCTGtagaatgaaaaaaaagatttgcaaTCTGAACAACTGTTGCAAAACCAGCTGTTGTAAAATATAGATAtagaatttattttgtttataaaagtGTATAATTTAAAGGTGTACATGTTTTTCCCTGTATGTTGCATTTTTCCAAGCAAGTTTTGTGGTTTGTTTTTgaagcataaataaaaatgttatgttt

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0045165 cell fate commitment biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100519-1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in cell fate commitment and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including central nervous system; forebrain neural keel; hindbrain neural plate; neural rod; and solid lens vesicle. Orthologous to human SOX13 (SRY-box transcription factor 13).

Ensembl:

ensembl_id ENSDART00000166886

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007073 lncRNA upstream 134268 37631714 ~ 37634030 (+) False XLOC_003629
TCONS_00007074 lncRNA upstream 134268 37631780 ~ 37634030 (+) True XLOC_003629
TCONS_00007065 lncRNA upstream 508635 37256303 ~ 37259663 (+) False XLOC_003627
TCONS_00007056 lncRNA upstream 597860 37169813 ~ 37170438 (+) True XLOC_003623
TCONS_00008652 lncRNA upstream 630456 37137076 ~ 37137842 (+) False XLOC_003623
TCONS_00008654 lncRNA downstream 9481 37841257 ~ 37848711 (+) False XLOC_003634
TCONS_00008653 lncRNA downstream 9481 37841257 ~ 37848711 (+) True XLOC_003634
TCONS_00008655 lncRNA downstream 163290 37995066 ~ 38000612 (+) True XLOC_003636
TCONS_00008656 lncRNA downstream 318112 38149888 ~ 38164754 (+) True XLOC_003637
TCONS_00008657 lncRNA downstream 771958 38603734 ~ 38614820 (+) False XLOC_003641
TCONS_00007084 mRNA upstream 42097 37720552 ~ 37726201 (+) False XLOC_003632
TCONS_00007086 mRNA upstream 42104 37720756 ~ 37726194 (+) True XLOC_003632
TCONS_00007085 mRNA upstream 42186 37720583 ~ 37726112 (+) False XLOC_003632
TCONS_00007083 mRNA upstream 91092 37652870 ~ 37677206 (+) True XLOC_003631
TCONS_00007076 mRNA upstream 116419 37638873 ~ 37651879 (+) False XLOC_003630
TCONS_00007089 mRNA downstream 73854 37905630 ~ 37923887 (+) False XLOC_003635
TCONS_00007090 mRNA downstream 77878 37909654 ~ 37920584 (+) True XLOC_003635
TCONS_00007091 mRNA downstream 448678 38280454 ~ 38420819 (+) False XLOC_003638
TCONS_00007092 mRNA downstream 500643 38332419 ~ 38420819 (+) True XLOC_003638
TCONS_00007093 mRNA downstream 597543 38429319 ~ 38458406 (+) True XLOC_003639
TCONS_00007079 other upstream 117334 37638982 ~ 37650964 (+) False XLOC_003630
TCONS_00007082 other upstream 118270 37647553 ~ 37650028 (+) True XLOC_003630
TCONS_00007077 other upstream 119195 37638980 ~ 37649103 (+) False XLOC_003630
TCONS_00007081 other upstream 123733 37639239 ~ 37644565 (+) False XLOC_003630
TCONS_00007069 other upstream 403738 37364446 ~ 37364560 (+) True XLOC_003628
TCONS_00007094 other downstream 756675 38588451 ~ 38588566 (+) True XLOC_003640
TCONS_00007097 other downstream 971835 38803611 ~ 38803738 (+) True XLOC_003642
TCONS_00007127 other downstream 2817695 40649471 ~ 40655871 (+) False XLOC_003667
TCONS_00007131 other downstream 3057404 40889180 ~ 40889294 (+) True XLOC_003670
TCONS_00007137 other downstream 3278893 41110669 ~ 41157928 (+) False XLOC_003675

Expression Profile

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