RNA id: TCONS_00019880


Basic Information

Item Value
RNA id TCONS_00019880
length 1345
RNA type mRNA
GC content 0.42
exon number 5
gene id XLOC_009983
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 27614989 ~ 27622183 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCATCACCTCCACCACGGTCCTAAGTGGAGAATCTCCTTTGCCCTGTGAGAGAAAGAAAGTGTAGGAGGTGTGGTGGAGAGCAAAGAGAAGGAACACGTTCCAGAACTCCAGCCAGAGTCTGCTAAGTGTGTCTATAAGATGTGTCAGTGCTATTTCAGTGCGTGAAACAAGATGCTACTCTGTTAAATTGGGAAAGCCACAAAagagaaaggaaaagaaaacggTGTGGAGTGTTGTAGCAGCTGCCAGCAACTGTGACTGTGAGGGAACTTTACTCTCTACAAGCTTATCATGGGAAAGTCAGCCTCCAGGCTTTTTAGTGAGGAGGCGCTGAAGACTCATAACGAGTACAGGAGGAAACATCAAGCCCCACCGTTAAAACTCAGCAGTAAACTATGCAGTGAAGCATCAAGATATGCCGAGAGCCTTGCCAGCACCAGGATTCTGAAGCATAGCGTTGAATCTAGTAGAGGAAACTGTGGAGAAAATTTAGCATGGGCATCCTATGATCAAACGGGTAAAGATGTGACTGATCGCTGGTATAATGAAGTGAATCAGTACAACTTCAACCAGCCAGGATTCTCTTCTGGAACTGGTCACTTCACTGCGGTGGTGTGGAAAGGCTCCAAGAAACTTGGTGTGGGCAAAGCTGTGGCCTCAGATGGTTCCACCTTCGTGGTGGCACGTTATTTCCCAGCTGGCAACATTACCAATCAGGGCCACTTCCAGGCTAACGTCCTGCCCCCTAAAAGCTGATCCAAATGTAGATGGACACAATGAGAGCAAAGGTAGGCAGGGGAATAGAAAGGGGAACAGTTGAATTTGGAGATTTTACCAGGAGGATCAAACACATCGACCGCAGGCTTTGGTTGACTTGGATACAAAGGTGTTACTTGAATAAAAAAGCTTAACTTGACATTTTTAGGTTTTATTAACTAGAATACCAGGATACCTAAACCTAGAATGTTGAAGGTATTTCTTGTTTGGTTTGTAACATTTTCCTAATACTCTACATTCATAATAGTAAGATCATTGTGTTCCTGTGCCAGGTACTGTACTTTATGTGGATGTCAGAgtaacagtatttaaaaaaaagtatatttttatgaGTTAAGTGAACGTAGATCTAATCCCATACCTCTATTGCACTAAAAATCTTACATCAAATATAGAGCCATTTCTGGGAGGCATTTTACATGGTGAATGTGACGAGTGTGACCTCCACAAAAAGGACTTTGGTAATGTTTATTCCTTTATGTCACAGACTGGTCATTACATGTTATTAATTTGATTATCCTTATGTCTTTGTATATTGATATTAATTAAAACTGAAGATGTTCAAA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041010-53 Predicted to be located in extracellular region. Predicted to be active in extracellular space. Orthologous to human GLIPR2 (GLI pathogenesis related 2).

Ensembl:

ensembl_id ENSDART00000005625

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019876 lncRNA upstream 43638 27569837 ~ 27571351 (+) True XLOC_009980
TCONS_00021950 lncRNA upstream 58200 27543588 ~ 27556789 (+) False XLOC_009979
TCONS_00021720 lncRNA downstream 217744 27839927 ~ 27873367 (+) True XLOC_009984
TCONS_00021952 lncRNA downstream 427371 28049554 ~ 28050028 (+) True XLOC_009986
TCONS_00021953 lncRNA downstream 647832 28270015 ~ 28271395 (+) False XLOC_009987
TCONS_00021954 lncRNA downstream 1038212 28660395 ~ 28667333 (+) False XLOC_009994
TCONS_00021955 lncRNA downstream 1038220 28660403 ~ 28663860 (+) True XLOC_009994
TCONS_00019878 mRNA upstream 5817 27603739 ~ 27609172 (+) False XLOC_009982
TCONS_00019879 mRNA upstream 5817 27603748 ~ 27609172 (+) True XLOC_009982
TCONS_00019877 mRNA upstream 12477 27593698 ~ 27602512 (+) True XLOC_009981
TCONS_00019875 mRNA upstream 33501 27564270 ~ 27581488 (+) False XLOC_009980
TCONS_00019868 mRNA upstream 56093 27543545 ~ 27558896 (+) False XLOC_009979
TCONS_00019881 mRNA downstream 335625 27957808 ~ 27998856 (+) True XLOC_009985
TCONS_00019882 mRNA downstream 647854 28270037 ~ 28371330 (+) True XLOC_009987
TCONS_00019883 mRNA downstream 761575 28383758 ~ 28512860 (+) False XLOC_009988
TCONS_00019884 mRNA downstream 761609 28383792 ~ 28451338 (+) True XLOC_009988
TCONS_00019887 mRNA downstream 924974 28547157 ~ 28574789 (+) False XLOC_009990
TCONS_00019873 other upstream 59749 27549842 ~ 27555240 (+) False XLOC_009979
TCONS_00019866 other upstream 59853 27543308 ~ 27555136 (+) False XLOC_009979
TCONS_00019885 other downstream 765863 28388046 ~ 28388163 (+) True XLOC_009989
TCONS_00019905 other downstream 1394753 29016936 ~ 29019138 (+) True XLOC_010002
TCONS_00019912 other downstream 1594091 29216274 ~ 29216360 (+) True XLOC_010005
TCONS_00019938 other downstream 2380569 30002752 ~ 30036693 (+) False XLOC_010020
TCONS_00019939 other downstream 2458360 30080543 ~ 30080661 (+) True XLOC_010021

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU160307 True 1755 TUCP 0.39 5 CI01000027 6952946 ~ 6957767 (+)
eurasian perch (Perca fluviatilis) TU160307 True 393 lncRNA 0.44 1 NC_053122.1 30077818 ~ 30078210 (+)