RNA id: TCONS_00019890


Basic Information

Item Value
RNA id TCONS_00019890
length 907
RNA type mRNA
GC content 0.35
exon number 4
gene id XLOC_009992
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 28596555 ~ 28599328 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTAAACTCGATTCATCAGTGCATCTACGCTACGCTCAAGCCGACATCACAGCCGCTCAACACTCGCCTAAGAAAATGACTTTAAAGGCAGAATTCGATCAATATGCAGAGGATGTGAAGAAAGTCAAGACCAGACCTACAGACCAGGAGCTGCTGGATTTGTACGGCCTCTACAAACAAGCTGTTGTTGGGGATATTAATATTGATAAACCTGGGATGATCGATTTGAAAGGGAAAGCCAAATGGGATGCATGGGATTCAAGGAAAGGTATGTCAACTGAAGATGCCATGAAAGCCTACATTACACTGGCCAAGCAAGCCATCGAAAAGTATGGAAAGTGATGGGGGCAAAATCAAACTAACATCTGCAAATTTAGATGTAAAGAGTATATAGATGTAAACATTCACCATGAAAACAACACGAcggggtcacactttacaataatgttaattaatgcatttactaacatgaacaaacaatgaacaatacatttactactgtatttgttcatgctagttaacgttatttaatgataatacagtagttcattgttagttaatgttaactcatggtgcattaactaatgttaacaagcatggacttggatgttaataatgcattaataaatgttcagttatgattaatatATATCATGTTCATGTGtttttcatgattagttcatgttagtaaacgcataatgaaccttattgtaaagtgttacccacgaCCGAAACTTTATATAGGCTTAATGTAATATAGATGAACAAATGACAAGATAATAATCTTGGTTTTGTAGTTCTACTTCCTGATTATATGTCAGGTGAGTCCTCAAGATGGAAGCCTGTAATcttgctttttttatatttaaaaaaatgagtcACTGAATAAAGCTCAAATATCACTTTAA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0000062 fatty-acyl-CoA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050913-108 Predicted to enable fatty-acyl-CoA binding activity. Is expressed in central nervous system; neural crest; and yolk syncytial layer. Orthologous to human ACBD7 (acyl-CoA binding domain containing 7).

Ensembl:

ensembl_id ENSDART00000046209

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021953 lncRNA upstream 325160 28270015 ~ 28271395 (+) False XLOC_009987
TCONS_00021952 lncRNA upstream 546527 28049554 ~ 28050028 (+) True XLOC_009986
TCONS_00021720 lncRNA upstream 723188 27839927 ~ 27873367 (+) True XLOC_009984
TCONS_00019876 lncRNA upstream 1025204 27569837 ~ 27571351 (+) True XLOC_009980
TCONS_00019874 lncRNA upstream 1039766 27555031 ~ 27556789 (+) True XLOC_009979
TCONS_00021954 lncRNA downstream 61067 28660395 ~ 28667333 (+) False XLOC_009994
TCONS_00021955 lncRNA downstream 61075 28660403 ~ 28663860 (+) True XLOC_009994
TCONS_00019908 lncRNA downstream 425973 29025301 ~ 29029007 (+) False XLOC_010003
TCONS_00019909 lncRNA downstream 425975 29025303 ~ 29025882 (+) True XLOC_010003
TCONS_00021956 lncRNA downstream 612034 29211362 ~ 29227112 (+) False XLOC_010005
TCONS_00019888 mRNA upstream 5014 28578352 ~ 28591541 (+) False XLOC_009991
TCONS_00019889 mRNA upstream 17242 28578648 ~ 28579313 (+) True XLOC_009991
TCONS_00019887 mRNA upstream 21766 28547157 ~ 28574789 (+) False XLOC_009990
TCONS_00019886 mRNA upstream 21766 28547157 ~ 28574789 (+) True XLOC_009990
TCONS_00019883 mRNA upstream 83695 28383758 ~ 28512860 (+) False XLOC_009988
TCONS_00019892 mRNA downstream 2646 28601974 ~ 28627568 (+) False XLOC_009993
TCONS_00019893 mRNA downstream 3095 28602423 ~ 28626283 (+) True XLOC_009993
TCONS_00019894 mRNA downstream 128055 28727383 ~ 28754071 (+) True XLOC_009995
TCONS_00019895 mRNA downstream 129019 28728347 ~ 28737174 (+) True XLOC_009996
TCONS_00019896 mRNA downstream 155075 28754403 ~ 28760006 (+) True XLOC_009997
TCONS_00019885 other upstream 208392 28388046 ~ 28388163 (+) True XLOC_009989
TCONS_00019873 other upstream 1041315 27549842 ~ 27555240 (+) False XLOC_009979
TCONS_00019869 other upstream 1041453 27543582 ~ 27555102 (+) False XLOC_009979
TCONS_00019867 other upstream 1041506 27543497 ~ 27555049 (+) False XLOC_009979
TCONS_00019905 other downstream 417608 29016936 ~ 29019138 (+) True XLOC_010002
TCONS_00019912 other downstream 616946 29216274 ~ 29216360 (+) True XLOC_010005
TCONS_00019938 other downstream 1403424 30002752 ~ 30036693 (+) False XLOC_010020
TCONS_00019939 other downstream 1481215 30080543 ~ 30080661 (+) True XLOC_010021
TCONS_00019951 other downstream 2371173 30970501 ~ 30971157 (+) True XLOC_010029

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU167860 True 321 lncRNA 0.44 1 CI01000028 5645163 ~ 5645483 (+)
eurasian perch (Perca fluviatilis) TU167860 True 2750 lncRNA 0.40 2 NC_053123.1 17730056 ~ 17733251 (+)
tiger barb (Puntius tetrazona) TU167860 True 705 TUCP 0.38 5 NC_056714.1 17400334 ~ 17407196 (+)