RNA id: TCONS_00019896


Basic Information

Item Value
RNA id TCONS_00019896
length 995
RNA type mRNA
GC content 0.44
exon number 3
gene id XLOC_009997
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 28754403 ~ 28760006 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAGCCGCGCGCTCGTGAAGAGTGGGCGTGTCGGGGGCGCGCAAAGCTACACTGGTCAGGTGATGAAATACCTTCACTTCTCTTCACCTGCTCTAGTTTCCGCACGGGACTTGAAACCAGCCCAATGGCGACAGAGTACACAGATCTAGAGTTGGCCATCAACACCTTGGTAACAAACTTTTACTCAGCATCACCGAATAATGCTGATTCGCTCACAGCCCAGGAGTTCCAGAGCATGCTCTCCAAAGAGCTGCCCACCATGGTGAAAACAGCAGGGGACCAGGAAGGACTCAGCAAAATCCTGAAGGATTTGAACGTGGAAGAAGGGCAGGGCATCACATTCAAGGATTTTTGGCAACTGGTTGAGTCTCTGGCCAATAATCAATTTGGATTGCAGAGCAAAGAGAAGCAGGTGAAATGTGTGAAATGCAGTCTGATGTAAGACCGGCCCTGAGCAAACAAGACCGTTCAACATTACGTAGATGTCCGCCACTGCCCTGAGAAAACACGTCCAATCTGTCACTCCTATTTCCCATCATTCCTCTGCATTTTTCTGCTGGTCGCTGAGGTCTTATCATAATTAGGTGTCACAAGGAGCTTCCTGAATAAATACCCCTCAAGCTCTTATGAAACAGACCGCCAGTATAATCTCTATCATCAGTGTAACCTGAGCCACACCTGCTCGGCCAGATAGCATAAGATCCAGTGGCACGTTTATTTCCTTATTTGTTCTGGTGCTGCaggtttttgtgtttgtgtgtcacttTTAGCCTGCTcaatattttaactatattttttatacacttaattggaaaaaaaagtttttatgtgaCAATTGTGATCGTATTTGTTTGTGCTGACTGACATGAATTCATAAACAGATAATGTGAAGTATTTTAGAGGGAAATAGAGATGACACGACATATTCTGTACTGTATTTGGGTTTATGGTAACACAATGTAATTTTCTGtgttgatattattaaatatgtgcAAA

Function

GO:

id name namespace
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005615 extracellular space cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0048306 calcium-dependent protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080407-1 Predicted to enable calcium ion binding activity and calcium-dependent protein binding activity. Predicted to be active in extracellular space and perinuclear region of cytoplasm. Is expressed in gill; gut; head kidney; and spleen. Orthologous to several human genes including S100A14 (S100 calcium binding protein A14).

Ensembl:

ensembl_id ENSDART00000103340

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021954 lncRNA upstream 87070 28660395 ~ 28667333 (+) False XLOC_009994
TCONS_00021955 lncRNA upstream 90543 28660403 ~ 28663860 (+) True XLOC_009994
TCONS_00021953 lncRNA upstream 483008 28270015 ~ 28271395 (+) False XLOC_009987
TCONS_00021952 lncRNA upstream 704375 28049554 ~ 28050028 (+) True XLOC_009986
TCONS_00021720 lncRNA upstream 881036 27839927 ~ 27873367 (+) True XLOC_009984
TCONS_00019908 lncRNA downstream 265295 29025301 ~ 29029007 (+) False XLOC_010003
TCONS_00019909 lncRNA downstream 265297 29025303 ~ 29025882 (+) True XLOC_010003
TCONS_00021956 lncRNA downstream 451356 29211362 ~ 29227112 (+) False XLOC_010005
TCONS_00019911 lncRNA downstream 452415 29212421 ~ 29227002 (+) False XLOC_010005
TCONS_00021957 lncRNA downstream 452443 29212449 ~ 29227112 (+) False XLOC_010005
TCONS_00019894 mRNA upstream 332 28727383 ~ 28754071 (+) True XLOC_009995
TCONS_00019895 mRNA upstream 17229 28728347 ~ 28737174 (+) True XLOC_009996
TCONS_00019892 mRNA upstream 126835 28601974 ~ 28627568 (+) False XLOC_009993
TCONS_00019893 mRNA upstream 128120 28602423 ~ 28626283 (+) True XLOC_009993
TCONS_00019890 mRNA upstream 155075 28596555 ~ 28599328 (+) False XLOC_009992
TCONS_00019897 mRNA downstream 4011 28764017 ~ 28790417 (+) True XLOC_009998
TCONS_00019898 mRNA downstream 32152 28792158 ~ 28796865 (+) False XLOC_009999
TCONS_00019899 mRNA downstream 32171 28792177 ~ 28794203 (+) True XLOC_009999
TCONS_00019900 mRNA downstream 121229 28881235 ~ 28887159 (+) True XLOC_010000
TCONS_00019901 mRNA downstream 143768 28903774 ~ 28908989 (+) False XLOC_010001
TCONS_00019885 other upstream 366240 28388046 ~ 28388163 (+) True XLOC_009989
TCONS_00019873 other upstream 1199163 27549842 ~ 27555240 (+) False XLOC_009979
TCONS_00019869 other upstream 1199301 27543582 ~ 27555102 (+) False XLOC_009979
TCONS_00019867 other upstream 1199354 27543497 ~ 27555049 (+) False XLOC_009979
TCONS_00019905 other downstream 256930 29016936 ~ 29019138 (+) True XLOC_010002
TCONS_00019912 other downstream 456268 29216274 ~ 29216360 (+) True XLOC_010005
TCONS_00019938 other downstream 1242746 30002752 ~ 30036693 (+) False XLOC_010020
TCONS_00019939 other downstream 1320537 30080543 ~ 30080661 (+) True XLOC_010021
TCONS_00019951 other downstream 2210495 30970501 ~ 30971157 (+) True XLOC_010029

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU161703 True 3362 lncRNA 0.36 2 CI01000027 7539471 ~ 7542955 (-)