RNA id: TCONS_00020058


Basic Information

Item Value
RNA id TCONS_00020058
length 3130
RNA type mRNA
GC content 0.46
exon number 11
gene id XLOC_010099
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 35870456 ~ 35901707 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCACACCCCCTTCTGTGACTCTGAGTGAGCACATAAAGCTGCTTTACATCACCCGACTCGAATAGTTCACCCCATTCACGGGTTGAGATGCAGTTTGGTTAGGATATAAAACGACACGTTTGTCATTTGgagttaaaaacttttttttaatcattggGTTTGTTTGTAACGCGCAACGATTTAAACGCGGACTTCAGATGACGTGAACTGGATATCGCCGTCTTTGCGGTTACTTGTGAATGATATTGTTTACAAAACGAAAGGAAACCATTTCACTGACCTGTAACATTTGGCAGTAGCTGAATCCTCCCATCGTGGACTAAATCGAATTATAGGCACTTATGAGAGAGACTGCAAGCGACAATGTCTAAGACACAGAAATCAGAGTCCAGGTCTCGCTCTCGATCAGCCTCCAGATCAAGATCTCATTCTGATTCCCGTTCCCGCTCCAGATCTCAAAGCAGCTCCTCCAGATCCAGGACGAGGAAGCGCAGATATGGGTCTAGGTCTCGCTCTCGGTCAAGATCCCATTCCCCGCCCCACAACCGGGAGCGGAACCACACACGGGAGTATCAGAACCAACGAGAGTTTCGAGGTAACCACAGAGGATTCCGGAGGCCATATTACTTTCGGGGCAGAGGTCAGGGCTTTTTCCGTGGCCGCTTTCAACGTGGTGGAAGGGGAGGAGGATATAACAACTACCGTCCTAAAAACTGGCAGAACTTCCGGCAACAccctcagcagcagcagcagcaatacTACCACAACAGTCCCAAGAGGGGCCGCTCTCGCTCTCCTAAGAAACAGGCAAACAGTCCAAAATCCCGCAGCCATTCCCGGCGCTCTGACAGGTCATCTTCAGGGAGGTCACCACAGTCGCATCATTCATCCTCCTCCAACTCTGGATCTGCCAAACgtaattgtaaaaatgtaagaGAGGATGTTTTGGTTATCGAAGAAACACAAGGAGGAGGAGATAAGGCTCTGGTGGAGCAGGTCAAAGGTACTTCTGCAGCTGAGGGAAATGTTGATGTAGACCGGACTTTGGAGAACTGTCAGGTTTTGATGAACCATGACTCAAGTCCTAAAAGAACAAGTCCGCAGGTCTGCGTATCTGTCACTAATGACCAACCAATTGATTCTACATCCAGCAAGACCAGTCCTGCTCAAAAGAGTTCAAATTCTCCTAAAAAAGGTGCCACCGCCTGGCAGAATGTTGAAACTGCACCTTCAAACAGCAGCCCAGTAAAGAAAAGCACACCACCGGTTTTCAATGGTTTTGGGCTCTTTACAAATTTAGACCAAGAGTCAGATGATACACTTGCTCTCTCTGCTGCATTTATGAAATTCCTGGAGGAGCAAAAGGTTAAAAAACAGGCCTCTGCATTAGAAAACAACAGGCATAAAGGGAAAAGTAATGGAGATATAGTGTGTGATAAAGAAAATGGAGGAATATTTGATAAAGGCATTGAGTTGTCTCACGTTGTTGATCCTGACAACACAGCAGAGGGGAAATGCAAATCTGCCAAGAGTGGTGACAGTAACAAATTATCCAAAAGCGCACCTAAAAAGGCTCCTCGAAACAGCCCACCATTTCAATGCGAGGAAGGTGAGGATGATGAAGAAATGGAGTTTTCTGATATAGTGGAGGATATGGAAAATAGTCCCTGCAAAAGCAAAGTCACCATGTCTGCTCGTGAAATGTTCGAGAATCGCATCAGGAGGATGCAGGACATGACATGGGATGATGAGCTGGAAGCTCTGTTGCTCTGCCATAAACAGGAAAGAGCATCGAACATCCTAGCTGCGCTCTCTAAAAGAGACCAGCTCAGTGGCATGTTTAGGGATCCTTCCCCTGAAAAGCTTTCTAGTGTAAAACGAAAGGAGAAAACCACAGTAAGTTCCTCTTCTAAACCTACACTACCGCCCAGGAGGAGCTCTGAAAACCGTGAGCAGGAGATGTTTGTGGTTATGAACGAGGAATCCCCACCAAGAGCTTCATTGAAAAGAGGAAGCTGTGAATTCAGTGTGAGGATGGATTCTCTTAGTGATGACCTCGCCAGGACATCGGTTCTTACCAATGAAAGAAGGAATCTTATGGATTTTGTGCATATGGATAAAAAAGATTTGGAGTTTCAGTCTGTCCTTCGGCACCTTCAGGCTCAGCAGTTTCCCAGAAGCCCATCTGAGCTGTTTGCCCAACACATAGTTTCAATTGTTCATCACATTAAAGCTCAGTATTTTCCTTCCTCTGGACTGACCCTACATGACCGATTTGCCATGTACCAGAGAAGAGCTGCTGAGAAAGAATTCATGAAGCAGAGAAAGAGTCCAGAGATACACAGGAGAATTGATGTTTCTCCCAGTGCTTTTAAGAGGCACTCTCTTCTGTTTGATGAGGTGAAAAGCTCCATGGAAAACAGCTTCAAGGTCGATGGTAAAAAATCTAAAGGAGAAACAATGGACCTTCGGCTGGATATTGAGCGCAGGAAGAAATACTTGATTGGAGAGAGGGAGCCCAGAGAGGAAGAATGCGGAGGAAGAGTTTTGAGGGAATCTCCAGATTCAAGCAAGGAAATACCCACAGAGAAATcctcaaaaaaacacaaaaaatcaaAGAAAAGCAAGAAGAAACGTGAGCGTTCTCAGTCATCCTCCTCATCTTCGTCATCTTCCTCTGTTTACAATGAAGAAGAGGGTGAGATTAAGCCAGAAAGCTTCTCTAAAGTCCAGCTAGGGCTGAGAGAGTATGGAGAGGCTGTGGAAAGAGGCCGGCCACGAGGAGGCTTTCAGCTGAAAATACGTGGTAGAAGTTGGAACCGAGGAAATTTCCATGGAAACAGTAATGGCAATTCACACATGAACATGTTGGCAAAGAATGAAGGCTGGGATCAAGAATACACTCCCAAGAGCAAGAAACACATCCTACACAGTGAAAAAGATTTAGAAGCTGAAAGGAAGGTGATGAACTCACGAGGCCGTGGTCGCGGCAACATTATTCGTACAAAGGGACGTTTCCTACTGCGAAGGGCCACAAACACCACCAATAATACAAGCCCTAAATGGGCTCATGATAAATTCCAGGCCACCGATGATGAGGGCGAACAACAGAGAGAGGATGGGGAATAG

Function

GO:

id name namespace
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0008380 RNA splicing biological_process
GO:0016592 mediator complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0003712 transcription coregulator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030219-79 Predicted to enable DNA binding activity and transcription coregulator activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within RNA splicing. Predicted to be part of mediator complex. Is expressed in primitive heart tube and somite. Orthologous to human THRAP3 (thyroid hormone receptor associated protein 3).

Ensembl:

ensembl_id ENSDART00000184321

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021730 lncRNA upstream 53395 35815389 ~ 35817061 (+) True XLOC_010098
TCONS_00021729 lncRNA upstream 89617 35777675 ~ 35780839 (+) True XLOC_010097
TCONS_00021984 lncRNA upstream 313480 35555766 ~ 35556976 (+) True XLOC_010093
TCONS_00021980 lncRNA upstream 954203 34913287 ~ 34916253 (+) False XLOC_010086
TCONS_00020063 lncRNA downstream 16332 35918039 ~ 35927160 (+) False XLOC_010100
TCONS_00021985 lncRNA downstream 131711 36033418 ~ 36038394 (+) True XLOC_010101
TCONS_00021731 lncRNA downstream 310073 36211780 ~ 36218004 (+) True XLOC_010103
TCONS_00021732 lncRNA downstream 336764 36238471 ~ 36296065 (+) False XLOC_010104
TCONS_00021733 lncRNA downstream 337874 36239581 ~ 36337111 (+) False XLOC_010104
TCONS_00020054 mRNA upstream 94382 35661331 ~ 35776074 (+) False XLOC_010095
TCONS_00020055 mRNA upstream 97232 35661771 ~ 35773224 (+) False XLOC_010095
TCONS_00020057 mRNA upstream 119811 35728992 ~ 35750645 (+) True XLOC_010095
TCONS_00020051 mRNA upstream 225689 35593785 ~ 35644767 (+) False XLOC_010094
TCONS_00020050 mRNA upstream 225689 35593785 ~ 35644767 (+) False XLOC_010094
TCONS_00020061 mRNA downstream 3324 35905031 ~ 35938157 (+) False XLOC_010100
TCONS_00020062 mRNA downstream 14664 35916371 ~ 35933266 (+) False XLOC_010100
TCONS_00020064 mRNA downstream 16756 35918463 ~ 35937709 (+) False XLOC_010100
TCONS_00020065 mRNA downstream 22481 35924188 ~ 35933278 (+) True XLOC_010100
TCONS_00020067 mRNA downstream 224603 36126310 ~ 36163508 (+) False XLOC_010102
TCONS_00020056 other upstream 144324 35726018 ~ 35726132 (+) True XLOC_010096
TCONS_00020045 other upstream 464569 35402061 ~ 35405887 (+) True XLOC_010091
TCONS_00020039 other upstream 589668 35206855 ~ 35280788 (+) True XLOC_010087
TCONS_00020038 other upstream 1145774 34724568 ~ 34724682 (+) True XLOC_010085
TCONS_00020014 other upstream 2114077 33752102 ~ 33756379 (+) False XLOC_010070
TCONS_00020068 other downstream 680779 36582486 ~ 36584785 (+) False XLOC_010109
TCONS_00020072 other downstream 846899 36748606 ~ 36749324 (+) False XLOC_010112
TCONS_00020082 other downstream 1869776 37771483 ~ 37771600 (+) True XLOC_010119
TCONS_00020086 other downstream 2119312 38021019 ~ 38021134 (+) True XLOC_010122
TCONS_00020097 other downstream 2394294 38296001 ~ 38299644 (+) True XLOC_010128

Expression Profile

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