RNA id: TU524336


Basic Information

Item Value
RNA id TU524336
length 798
RNA type TUCP
GC content 0.39
exon number 2
gene id G456774
representative True

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 426083 ~ 427025 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGAAAAAAGTCCCATGAAATCCTGGTGGGATTGCTCATTACCATTTTTTTAGTTGTTGTTGTTGTATCTTATGCCAGATAGCTAAGAAAAGTAATAGTGCATCAATCTGAAGTATTATTCATGTCCATAGCACAGACAATGCTGGAAGAGCTTGCTAAAGTTTAATTCTTAGGATTAGGTTTGTTGAAATCAAGTATTTGCAGCATTAACTACAAAATGTGGTATAAAGCACTTGTGTCTCACTCTGGAGTCTCCTCTTTGAGCGGCGTGTGGGATCAGTATGGGCCCCTCCAGCTCTGCAGGGCTCAGTACTTCTCCCCTCTGGCCAAGAGTAAAAATAGTGTTCCTACTCTTGAGAGAAGGCTTGGAGAAAAAACCTTTTTTGGCTGTGTCCTCTACTCCCATCAGATCATCCTTGTCTGCAACGTCTTCATACTGGCAAAAGAAAGAGAAGAGAGAGAAAGAATGAAAACAAGACAAATTGAGAAATACATTTTAGCAGTAAGGATTAGGTTCATGCCAAGCACAATATAGCACAGTCTTGAGTGTGTCTTTGCTTTTATACATTATATTTATTAGTGTTGTCCAAAATATCGATATTTTGATATGTATCGATACTGAAATATCTGAAACCCCTATCCAATATCACGTTTCTGCTGTAACGATACACCAATATCAGCTGCGCATTCTCACTCTTTTTCCTCTCCAACAGCGAGTTGACACACACCCTCCTCATTCACTCGTCTCATTCAATCTGGTTGAATATTTTTGTATAGCGCATAATTTTAGTCATTCCCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU524337 lncRNA upstream 22318 403372 ~ 403765 (+) True G456775
TU524344 lncRNA upstream 29779 396042 ~ 396304 (+) True G456782
TU524342 lncRNA upstream 33667 392192 ~ 392416 (+) True G456780
TU524325 lncRNA upstream 87582 338275 ~ 338501 (+) True G456763
TU524322 lncRNA upstream 91090 334783 ~ 334993 (+) True G456760
TU524353 lncRNA downstream 58531 485556 ~ 485862 (+) True G456791
TU524355 lncRNA downstream 59778 486803 ~ 487488 (+) True G456793
TU524357 lncRNA downstream 60932 487957 ~ 488309 (+) True G456795
TU524360 lncRNA downstream 66315 493340 ~ 493807 (+) True G456798
TU524362 lncRNA downstream 68210 495235 ~ 495481 (+) True G456800
CI01000321_00326486_00355049.mRNA mRNA upstream 70881 326393 ~ 355202 (+) True CI01000321_00326486_00355049
CI01000321_00283589_00284224.mRNA mRNA upstream 141746 283324 ~ 284337 (+) True CI01000321_00283589_00284224
CI01000321_00150756_00152124.mRNA mRNA upstream 273894 150756 ~ 152189 (+) True CI01000321_00150756_00152124
CI01000321_00098493_00100489.mRNA mRNA upstream 325497 98296 ~ 100586 (+) True CI01000321_00098493_00100489
CI01000321_00441382_00448773.mRNA mRNA downstream 14357 441382 ~ 448780 (+) True CI01000321_00441382_00448773
CI01000321_00511077_00516356.mRNA mRNA downstream 83529 510554 ~ 516356 (+) True CI01000321_00511077_00516356
CI01000321_00549095_00550611.mRNA mRNA downstream 122070 549095 ~ 550648 (+) True CI01000321_00549095_00550611
CI01000321_00559268_00567811.mRNA mRNA downstream 132243 559268 ~ 568138 (+) True CI01000321_00559268_00567811
CI01000321_00649226_00658653.mRNA mRNA downstream 222201 649226 ~ 658950 (+) True CI01000321_00649226_00658653
TU524456 other downstream 391439 818464 ~ 822847 (+) True G456881
TU525588 other downstream 3362293 3789318 ~ 3789972 (+) True G457857
TU527032 other downstream 3579601 4006626 ~ 4009532 (+) False G459103
TU527033 other downstream 3579638 4006663 ~ 4009532 (+) True G459103
TU527265 other downstream 4058372 4485397 ~ 4488552 (+) True G459303

Expression Profile