RNA id: CI01000325_09571021_09576839.mRNA


Basic Information

Item Value
RNA id CI01000325_09571021_09576839.mRNA
length 3130
RNA type mRNA
GC content 0.45
exon number 12
gene id CI01000325_09571021_09576839
representative True

Chromosome Information

Item Value
chromosome id CI01000325
NCBI id null
chromosome length 10587162
location 9570486 ~ 9577181 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGTTGTTTGAAAAACCTGTATGTCATTGCAGCAACCATATGCCAATAATTACTGTGACCACTTAGTCTAAATGTTATTTTCAGATTGTCATTGATTGAAAGACAGGTAAGAGCACTGAATAAAGATTGTAATGAACATTCTGCTACTTTTTGACATGTTGCATGCTCCTTATTGCATGTCAGTGAGTACTGTACCCTGTTTCAATAATCAATGGTGTTTCAATTATGACAGTGTCATCAGTATACATATGAAGGATACATTTTGTCTTTTGTAGCACAGGTATTCAATATGTCTTTTCCACTGACAATGTGATAGGCAGACGATACCATCTCAGAATAAGGATGGGTGCTGAGAGCAGTGCCCTGCCAAGCTGTGTGCTGGAAGAGCCGCTGCTGACGCTGCCCTCTGGTCTTACCATGTACTCCGCCCTCCTCCGGGATGGCAAGCCTGCCTCCGTCTTTGTGCATAAGCAAGACAATGAAGATAAAGTCAATAAAGCTGCCAAGCACTTGAAGACATTAAGGCATCCGTGTCTTCTTCGCTTCCTGTCATGCTCAGTGCAGGATGGCGGTATACATTTAGTGACAGAGCCAGTTCAACCATTAAAACGGCTGCTAGACAATCTTACTCCAGAGGAAATCTGCGCAGGCCTCTATGATCTGCTGCAAGCACTAGTCTTTCTACATGACAGGGGCAAATCAAGTCACAATAATGTATGCATATCCTCAGTGTTTATCAGTGAAGATGGCCATTGGAAGCTTGGGGGAATGGAAACTGTCTGCAAGTTTTCAGAGGCAACACCAGAGCTTGAAGGATTCAAAACTCTTCCCGACAAGCATGCCCACTCCCGAGACGCTTTTTCATTCGGGGTGATGTTGGAGGCTCTTCTTCCACTCCTGACGGGACATGTCTCAGATGATTTATTGGAGAGTCTAAAGAACATGCTGCAGGCCAGCCTATTGACCCCTGACCCCATGTCTCGCCCATCTCTCAGCAGTTTGCTGACTCACGCTTTCTTCAGAAATGACTTCTTAGATATCATGAATTTTCTGAAGAGTTTGACCCTGAAAAATGAGGAGGAGAAGAATGAATTCTTCAAGTTTCTCTTGGACCGAGTTCAGAACCTCCCAGAGGTGTTAATTGCTACACGTCTGGCTCCTAAACTGCTCAATTCTTTAGTGTTTGCTGAGCCCATGGCTGTGAAAAGCTTCCTTCCTAACCTGCTACGGCCTAAGCAAGACCCAAATGTAAGTGCTGGAGAGGAGTGTCTTCTGTCTATGTCTTTGTATCGGAGATACGTGGTTCCTCAGCTCCTCAAGCTCTATAAGATGAATGAGGAACATGTCAGGATTGTGCTTCTCTCCCACATTCACATCTATGCAGAGTTCTTTCCTCATGAAGAACTCAAAAAACAGATTCTTCCTCAGGTTTTGCTGGGAATGAGGGATACAAATGACTCACTCGTCGCTCTGACACTACAGAGCTTGGCTGTGCTTGTCCCGTTGCTGGGTGCCCAAGTGGTTGTTGGTGGGGAGAGGACAAAAGTTTTTAAACGGACAACGCCAAACTTCACCAAGTCAACAGAGGTCACCCCAGAGACATCACCTGTGCATATTGTTGGGCCATCACATCCCCATATCTCACAACCACCCAAAGTTCTGAATCTGTTCCCTAAGGGCTCAGAGGACAAAAAGGTTGTTATAGAAAATATGTACTCCTTCCAAGCAACTGAAAAAAACACCGCTCAGCGCACCATTGCAGAGAGAGCAGGGTTTAGCAGCGAGATGTCGTTCCCTTTGAATGGGTACAAAATAGGCACACAGGCTGTGGACAGCATGAAAAGTAACGGAGCGGTGAGATCCGACGAAGACTGGCCTAACTGGAGTGACACAGAGGAGGCAGAGAAAGACAAGAGCCAATCAGTCCAGATTAGCATTCAGTCGGCAGATATCCCAGCTCAGAGCAACTCTGCTATGCCAGCCAACAATGAGGATGAGAGCGAGGAACCCTGGGATGATTTCGAGGACTCCGAAGTGATCTCAGAACAATCACCCTCCACTCCTTTACCAGTCTCTGTACCAAAGACATCAACAAAAAGCAGTGCGTCATCTCTGTCTGAAGCTAGAGGTGGCCCTCCAAGACAGTCAAAAGCACTCAAACTGAACCCTAGTGTGAAAAGAGCTCCAGATCATAACCATACCTCATCATGGGACACCGGTTGGGACCAGGCAACTGACACCCTCAAACCCAGCAAAACAAGTTTAGCATCGGAGCCCAAGCCAAAAAGCACAATCAAAAGCCCTAAAGCTGGAAGTCTCGGAGAGGAGTTCACAATTGCGGTGAAGAAGAAGCCAGAGAAAGATCCAGAACTAGACTTCTTTGCAGACATGGTCCCAGAAATAAAGCTGTCTTCCTCATCTCTTCTGCTCCCTGTGGAGAGCTCGGCCAGTGAACCCATCACGGGATATACAACATCAGACCCATCGATAGATAGACTAAGCCTCACTGCCAAATTTGCTGCAGCTGACTTGACTGAGACTGAGGCAGAAGGTTGGGGTGATGACCTCAACTGGGAAGATGGGAACACATGGTGATCACTGTGGTCCTCTACAGAAAGCCATATGACACAGATTCCCATACAAAAACACTTACATATGCCATCATGATATTGTCACTAAAGACCAACCAATTAGACTACAACAGACATAAAAATGTAGTAATTAAGAACTACAGTTTAAGAGGGTAGTGTGTATTTTCAGATTCCCGCACTCAATCCAATATGATAATCAATCTACCGTCGCAATAGAAATTGTTTGGCTAATGAAAAGGGTGTCGTTTTGTTTTTTCAAGATAGCATGATGGACCTAAGTATGCCAAATCCTATTAGGAATCCTTCAGTTATGTTGCACTGAGGAAGGCTACATAACTTGAAAATACATCCACTTCTAATGTTGGTTTTATTTGTGCCATACAGCTTTTTTTTTGTTGTTGTTGTTCAATAAGCCTTAGAGGACAGACAGCCTCAACGTGAGGAAAAAATGCATTCATACACGGACTCTAATTTGTTCACTAGATTTGGGTGAGAGCCTGACATAATTTATTTGTATTATCAGCTGCTGATTAAATAAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process

KEGG:

id description
K17542 SCYL3; SCY1-like protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU537803 lncRNA downstream 174948 9386454 ~ 9395538 (-) True G468562
TU537792 lncRNA downstream 195121 9375143 ~ 9375365 (-) True G468551
TU537791 lncRNA downstream 196137 9373991 ~ 9374349 (-) True G468550
TU537695 lncRNA downstream 237287 9331030 ~ 9333199 (-) True G468460
TU537716 lncRNA downstream 365639 9204570 ~ 9204847 (-) True G468481
TU537786 lncRNA upstream 2809 9579990 ~ 9581436 (-) True G468545
TU537774 lncRNA upstream 95669 9672850 ~ 9674067 (-) True G468533
TU537766 lncRNA upstream 219230 9796411 ~ 9799055 (-) True G468526
TU537885 lncRNA upstream 255764 9832945 ~ 9833293 (-) True G468639
TU537886 lncRNA upstream 256583 9833764 ~ 9834139 (-) True G468640
CI01000325_09537381_09540937.mRNA mRNA downstream 29156 9537216 ~ 9541330 (-) True CI01000325_09537381_09540937
CI01000325_09518831_09533382.mRNA mRNA downstream 36699 9518763 ~ 9533787 (-) True CI01000325_09518831_09533382
CI01000325_09434932_09471529.mRNA mRNA downstream 98957 9434905 ~ 9471529 (-) True CI01000325_09434932_09471529
CI01000325_09400787_09422170.mRNA mRNA downstream 148316 9400787 ~ 9422170 (-) True CI01000325_09400787_09422170
CI01000325_09334619_09368476.mRNA mRNA downstream 202010 9334604 ~ 9368476 (-) True CI01000325_09334619_09368476
CI01000325_09587938_09597881.mRNA mRNA upstream 10757 9587938 ~ 9597881 (-) True CI01000325_09587938_09597881
CI01000325_09614126_09615953.mRNA mRNA upstream 36364 9613545 ~ 9615953 (-) True CI01000325_09614126_09615953
CI01000325_09641427_09644339.mRNA mRNA upstream 63722 9640903 ~ 9644406 (-) True CI01000325_09641427_09644339
CI01000325_09681336_09769766.mRNA mRNA upstream 103917 9681098 ~ 9769766 (-) True CI01000325_09681336_09769766
CI01000325_09812512_09821344.mRNA mRNA upstream 235310 9812491 ~ 9821344 (-) True CI01000325_09812512_09821344
TU537690 other downstream 283162 9287209 ~ 9287324 (-) True G468455
TU536859 other downstream 872903 8679172 ~ 8697583 (-) True G467741
TU536851 other downstream 999008 8564630 ~ 8568433 (-) True G467737
TU536674 other downstream 1615294 7946345 ~ 7955192 (-) True G467578
TU536664 other downstream 1953656 7615486 ~ 7616830 (-) True G467570
TU537962 other upstream 589918 10167099 ~ 10192342 (-) True G468702
TU538097 other upstream 738949 10316130 ~ 10316685 (-) True G468823

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00035892 False 3024 mRNA 0.46 14 NC_007131.7 34012571 ~ 34028969 (-)