RNA id: CI01000325_09844992_09865415.mRNA


Basic Information

Item Value
RNA id CI01000325_09844992_09865415.mRNA
length 2526
RNA type mRNA
GC content 0.47
exon number 19
gene id CI01000325_09844992_09865415
representative True

Chromosome Information

Item Value
chromosome id CI01000325
NCBI id null
chromosome length 10587162
location 9844947 ~ 9865415 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGCAAGCGGACGACGCCAGATATTTAAAACGGAAATATAAGGGTGGCAGTTTAGATGTTCACCCCACAGAAAAAGCCCTCGTTGTCCAGTATGAAGTGGAAGCCACAATCCTGGGTGAGATGGGAGACCCAATGCTAGGAGAACGCAAGGAGTGCCAGAAGATAATTCGTCTGAAAAGCCTGAATTCCAACACAGACATTGCGTCTTTAGCACGGAAGGTAGTGGAGGAATGTAGACTCATTTCCCCTTCCAGACTTCCGGAGGTGGAACAGTTATTGTTCTACCTGCAGAACCGCAAGAAATCTGCTGAAAAGAAAGAGAAGAAACAGATCAAGCCAAGAGACCTGACTCCTTTTGAAGGCATGGAGCTGGATGAGGAGGCCAACATTAATAGCATAGATGACTATGTTGAGCTCCTGTACGAGGACATCCCTGAGAAGATCAGAGGAGCTACACTCATCCTCCACTTGGCCCGTAACCCTGACAACCTGGAGGAGTTGCTGCAGAATGAGACAGCTCTGGGCGCGCTGGCCCGGGTCCTGAGGGAAGACTGGAAGCAGAGTGTCGATTTGGCAACCACCATCATCTATGTCTTCTTCTGCTTCTCCAGTTTCTCCCAGTTCCATGGCCTGATCACTCACTACAAGATCGGCGCACTGTGCATGAGCATAATTGAGCATGAGCTGAAGCGCTATGACCTATGGCAGGACGAACTGCAGAAGAAAAAGAAGGCTGATATCCTTTCCATACAATCAGAACCTGAAGAAGGAGTACGAGAAAGCCCTGAAGAAGTACCATGGACTGCTGACCAAACAGGAACAGCTTTTAAGAGCTGTTGTGTTTCTATGTCATCAGTGGCTCTGTACCTGCTGCTGAATCTGTCTGAGGACACCCGCACAGAGCTGAAGATGAGGAACAAGAACATTGTCCACCTTCTGGTGAAAACGCTGGACAGAGACAGTGAGGAGCTACTGGTGCTGGTGGTGTCCTTCCTCAAGAAGCTCAGTATCTTCTTAGAGAATAAAAATGACATGGCTGAGGTAGATACAGTAGAGAAGCTGGCGAAACTGGTCCCCTGTGAACATGAAGATCTTTTGAACGTCACTCTTCGCCTCCTCCTTAATCTTTCCTTTGACACCGGCCTTCGCAGCAAGATGGTGGAGGTGGACCTTCTGCCCAGACTCACCGCATTGCTAGGAGACGAAGCGCAGAGACAGATCGCCATGTGCATTCTGTACCACATCAGCATGGACGATCGTTTCAAGTCCATGTTTGCCTACACGGACTGCATTCCACAGGTAATGAAGATGCTGTTTGATTGTGGTGAGGAGAGGATTGACGCTGAGCTCATTTCCTTCTGCATTAACCTGGCTGCTAACAAAAGGAATGCTCAGATTATGTGTGAGGGCAATGGTCTGAAGATGCTGATGAAGAGAGCACTGAAGCTAAAGGATCCTCTAATGATGAAGATGATCCGAAATATATCTCAGCATGATGGACCATCTAAAAATCTTTTCATTGACTATGTTGGAGACCTGGCGGCTCAGATCGGACTGAAGGAAGAAGAGGAGTTTGTGATTGAGTGCTTGGGCACGCTTTCCAATCTTACCATTCCTGATTTAGATTGGGAACTTGTGCTAAAGGAGTACAACCTGGTGCCTTATCTTAAAGACCACCTCAAACCAGGCTCTGCAGAGGATGACCTCATTCTGGAGGTGGTGATTATGATTGGCACTGTTTCAATGGATGACTCCTGTGCCGTAATGTTGGCCAAATCAGGCATCATTCCTGCTCTAATAGAACTACTGAACGCCCAGCAAGAAGATGATGAGTTTGTCTGTCAAATTGTATACGTCTTTTACCAAATGGTGTTTCACCAGGCCACTCGAGATGTCATTATAAAAGAAACTCGTATCCTTCATCTTGTAAAGCCTGATGATGATGGTGTTTTTCAGTCAACAGGTTTCTCTTTGTTTTTCTCTTTGACTGCTATCTTATCAGAGGCTCCAGCATATCTCATTGACCTAATGCACGACAAAAATGCAGAAATACGCAAAGTGTGTGACAATACATTGGACATCATTGCTGAATATGATGTGGAGTGGGGCAAGAAGATCCAGAGCGAGAAGTTCCGCTGGCATAACTCTCAGTGGCTGGAGATGGTGGAGAACCGACAAATGGATGAGGCAGAGCCTTTCATGTATGGAGACGACGGAGAACCTTTTCTCCAAAATGGTGACATCCTGGAACGACCAGACCTCTTCTACAGTGCAGATGGAATAATCCCAGCAGATGGTGCCATTAGTCCCGAGTTCTTCACAGACTTCCAGAATGGAGACCTGTTAGGACCACAGGGTTTCCCCAGCAGTTCTTTGACAGACGGATACGGACAGATGGGTGTGACTCCAGCACGTCCTGCCACGGCTTACGGCTTTCGGCCTGATGAGCAGTTTTATTATGGTTACACAGCGTCACGGTAGGAGAGTGTCAGGGAAGCCCTTCGTAAACTCTGAAAACCAATTAAA

Function

GO:

id name namespace
GO:0005871 kinesin complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU537887 lncRNA downstream 9823 9834753 ~ 9835124 (-) True G468641
TU537886 lncRNA downstream 10808 9833764 ~ 9834139 (-) True G468640
TU537885 lncRNA downstream 11654 9832945 ~ 9833293 (-) True G468639
TU537766 lncRNA downstream 45892 9796411 ~ 9799055 (-) True G468526
TU537774 lncRNA downstream 170880 9672850 ~ 9674067 (-) True G468533
TU537780 lncRNA upstream 37185 9902600 ~ 9909985 (-) True G468539
TU537933 lncRNA upstream 102294 9967709 ~ 9969030 (-) True G468681
TU537932 lncRNA upstream 131426 9996841 ~ 9997570 (-) True G468680
TU537960 lncRNA upstream 158250 10023665 ~ 10193979 (-) False G468702
TU537963 lncRNA upstream 298398 10163813 ~ 10192342 (-) False G468702
CI01000325_09812512_09821344.mRNA mRNA downstream 23603 9812491 ~ 9821344 (-) True CI01000325_09812512_09821344
CI01000325_09681336_09769766.mRNA mRNA downstream 75181 9681098 ~ 9769766 (-) True CI01000325_09681336_09769766
CI01000325_09641427_09644339.mRNA mRNA downstream 200541 9640903 ~ 9644406 (-) True CI01000325_09641427_09644339
CI01000325_09614126_09615953.mRNA mRNA downstream 228994 9613545 ~ 9615953 (-) True CI01000325_09614126_09615953
CI01000325_09587938_09597881.mRNA mRNA downstream 247066 9587938 ~ 9597881 (-) True CI01000325_09587938_09597881
CI01000325_09999928_10011153.mRNA mRNA upstream 133776 9999191 ~ 10011153 (-) True CI01000325_09999928_10011153
CI01000325_10035815_10039749.mRNA mRNA upstream 170341 10035756 ~ 10042303 (-) True CI01000325_10035815_10039749
CI01000325_10057059_10062989.mRNA mRNA upstream 190731 10056146 ~ 10062989 (-) True CI01000325_10057059_10062989
CI01000325_10072629_10073699.mRNA mRNA upstream 207016 10072431 ~ 10074411 (-) True CI01000325_10072629_10073699
CI01000325_10092490_10094515.mRNA mRNA upstream 226999 10092414 ~ 10094515 (-) True CI01000325_10092490_10094515
TU537690 other downstream 557623 9287209 ~ 9287324 (-) True G468455
TU536859 other downstream 1147364 8679172 ~ 8697583 (-) True G467741
TU536851 other downstream 1273469 8564630 ~ 8568433 (-) True G467737
TU536674 other downstream 1889755 7946345 ~ 7955192 (-) True G467578
TU536664 other downstream 2228117 7615486 ~ 7616830 (-) True G467570
TU537962 other upstream 301684 10167099 ~ 10192342 (-) True G468702
TU538097 other upstream 450715 10316130 ~ 10316685 (-) True G468823

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00035906 True 3648 mRNA 0.43 20 NC_007131.7 34420623 ~ 34453623 (-)
bowfin (Amia calva) AMCG00005080 True 3687 mRNA 0.44 19 CM030140.1 14745805 ~ 14771397 (+)