RNA id: TU537933


Basic Information

Item Value
RNA id TU537933
length 502
lncRNA type antisense_over
GC content 0.54
exon number 3
gene id G468681
representative True

Chromosome Information

Item Value
chromosome id CI01000325
NCBI id null
chromosome length 10587162
location 9967709 ~ 9969030 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTGTTCCATGCATGTGAACTTCTCGTCTACAGCTCGCTCCAATGCTCTGTCTCTTTCCTGAATGCGTTGTTTGAGCTTGAAGATGAGGTTGTCTTTATTTCCGGCAGGCTCTTTCTGACCATCCACCATCTCGCTGTAGTCTTGTATCAGTTGTTCTTTGTGCTCTAGTGAAGTCTTTAGTTCTCGGATGGTCTTCTCTCTTTCCTCGACCTCTTTCTCTCTCTGTCTCCCTTCGTCTCTCCATTTCTCCTCCATTTGCTGTACCTCAATGCGAGCCCTCCCTAGAGCAGCCAGTAGATCCTGGTTGTGTCTTTCTGCCTCCTGGTGGTGCTGCAGGGCTCCCTGCAGGTCAGCCTGGAGGCGCTGGTTTGCTCGGGCCAGGTCATCTTCTCGCCTCTGGCCCTGCTGCTGTACTCTTTGAAGGCCCTGCAGCTCAAGCTGGGCTGAGAACAGAGAGCCCTGGAGCTCCAACAGATCAGCCTGCAGACGGCTCGGAGTCAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU537780 lncRNA downstream 57724 9902600 ~ 9909985 (-) True G468539
TU537887 lncRNA downstream 132585 9834753 ~ 9835124 (-) True G468641
TU537886 lncRNA downstream 133570 9833764 ~ 9834139 (-) True G468640
TU537885 lncRNA downstream 134416 9832945 ~ 9833293 (-) True G468639
TU537766 lncRNA downstream 168654 9796411 ~ 9799055 (-) True G468526
TU537932 lncRNA upstream 27811 9996841 ~ 9997570 (-) True G468680
TU537960 lncRNA upstream 54635 10023665 ~ 10193979 (-) False G468702
TU537963 lncRNA upstream 194783 10163813 ~ 10192342 (-) False G468702
TU537952 lncRNA upstream 286749 10255779 ~ 10256848 (-) True G468699
TU537968 lncRNA upstream 288238 10257268 ~ 10268538 (-) True G468705
CI01000325_09844992_09865415.mRNA mRNA downstream 102294 9844947 ~ 9865415 (-) True CI01000325_09844992_09865415
CI01000325_09812512_09821344.mRNA mRNA downstream 146365 9812491 ~ 9821344 (-) True CI01000325_09812512_09821344
CI01000325_09681336_09769766.mRNA mRNA downstream 197943 9681098 ~ 9769766 (-) True CI01000325_09681336_09769766
CI01000325_09641427_09644339.mRNA mRNA downstream 323303 9640903 ~ 9644406 (-) True CI01000325_09641427_09644339
CI01000325_09614126_09615953.mRNA mRNA downstream 351756 9613545 ~ 9615953 (-) True CI01000325_09614126_09615953
CI01000325_09999928_10011153.mRNA mRNA upstream 30161 9999191 ~ 10011153 (-) True CI01000325_09999928_10011153
CI01000325_10035815_10039749.mRNA mRNA upstream 66726 10035756 ~ 10042303 (-) True CI01000325_10035815_10039749
CI01000325_10057059_10062989.mRNA mRNA upstream 87116 10056146 ~ 10062989 (-) True CI01000325_10057059_10062989
CI01000325_10072629_10073699.mRNA mRNA upstream 103401 10072431 ~ 10074411 (-) True CI01000325_10072629_10073699
CI01000325_10092490_10094515.mRNA mRNA upstream 123384 10092414 ~ 10094515 (-) True CI01000325_10092490_10094515
TU537690 other downstream 680385 9287209 ~ 9287324 (-) True G468455
TU536859 other downstream 1270126 8679172 ~ 8697583 (-) True G467741
TU536851 other downstream 1396231 8564630 ~ 8568433 (-) True G467737
TU536674 other downstream 2012517 7946345 ~ 7955192 (-) True G467578
TU536664 other downstream 2350879 7615486 ~ 7616830 (-) True G467570
TU537962 other upstream 198069 10167099 ~ 10192342 (-) True G468702
TU538097 other upstream 347100 10316130 ~ 10316685 (-) True G468823

Expression Profile