RNA id: TU537968


Basic Information

Item Value
RNA id TU537968
length 724
lncRNA type read_through
GC content 0.31
exon number 2
gene id G468705
representative True

Chromosome Information

Item Value
chromosome id CI01000325
NCBI id null
chromosome length 10587162
location 10257268 ~ 10268538 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTAAATCTCCTTCATGAGGTAGACCAAAATCATTTTCTCATGTAGCCTAACACAAGCAATAAAACCAACATTAGGCATTCTATATGTTGCTGCATTTAATTAAACACTGCATTAAACAACACAAGTAAAATAATAGAACAAAGAATAAAAAAAACTTGAATATGCAAATAGTAAATTGAGAACAATATTTTAACTCCACTGAACATGAGTAAATATGCTGAGCAAATATGAATGATTATTGACAAAAGCTTCAAAAAGATTAAGGTCCGTACGGATTTTTAAACACTACAACTTACGCAAAAACTTAAAATAATAAAATAATAATTTACATTGAGTAAAAATGACATTTTACAGAATAAAATTCACAACCCTGAAATTCAAAGCAAGACATATGCAGTGATTCCTGATATAACAATATATCAAAGCTGTGATACAAAATAAAAAGGGGGAAGAAATACATTTTACAAAAAAATCTGAGAGTGAAGCCATCACATATCTATGTAGAACGTAGACTGTTTACTTCAGAGGCGGAATGTTTGTTTGCCACTTGCTTCTCATTTAAAAATGGACTTCCTTTAAAAAAATTACAATAAACAAGGACCGTAAAAGTGGATGGATATTCTGTGGCTGTGCATCTCAGTGCAACAGAGGCCATGAGTCTTTAATACAAATGTGCACTTAGTAATATCCTGGGTGGTACTGTTGATTCCATGGCTTCTGGTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU537952 lncRNA downstream 420 10255779 ~ 10256848 (-) True G468699
TU537960 lncRNA downstream 63289 10023665 ~ 10193979 (-) False G468702
TU537963 lncRNA downstream 64926 10163813 ~ 10192342 (-) False G468702
TU537932 lncRNA downstream 259698 9996841 ~ 9997570 (-) True G468680
TU537933 lncRNA downstream 288238 9967709 ~ 9969030 (-) True G468681
TU537976 lncRNA upstream 23512 10292050 ~ 10302733 (-) True G468710
TU537977 lncRNA upstream 37921 10306459 ~ 10307849 (-) True G468711
TU538102 lncRNA upstream 83460 10351998 ~ 10352296 (-) True G468828
TU538103 lncRNA upstream 84826 10353364 ~ 10356035 (-) True G468829
TU537987 lncRNA upstream 117505 10386043 ~ 10388152 (-) True G468718
CI01000325_10223671_10247196.mRNA mRNA downstream 9736 10222845 ~ 10247532 (-) True CI01000325_10223671_10247196
CI01000325_10200118_10220665.mRNA mRNA downstream 36017 10199979 ~ 10221251 (-) True CI01000325_10200118_10220665
CI01000325_10092490_10094515.mRNA mRNA downstream 162753 10092414 ~ 10094515 (-) True CI01000325_10092490_10094515
CI01000325_10072629_10073699.mRNA mRNA downstream 182857 10072431 ~ 10074411 (-) True CI01000325_10072629_10073699
CI01000325_10057059_10062989.mRNA mRNA downstream 194279 10056146 ~ 10062989 (-) True CI01000325_10057059_10062989
CI01000325_10330659_10345549.mRNA mRNA upstream 62121 10330659 ~ 10345549 (-) True CI01000325_10330659_10345549
CI01000325_10486953_10491074.mRNA mRNA upstream 217738 10486276 ~ 10491074 (-) True CI01000325_10486953_10491074
TU537962 other downstream 64926 10167099 ~ 10192342 (-) True G468702
TU537690 other downstream 969944 9287209 ~ 9287324 (-) True G468455
TU536859 other downstream 1559685 8679172 ~ 8697583 (-) True G467741
TU536851 other downstream 1685790 8564630 ~ 8568433 (-) True G467737
TU536674 other downstream 2302076 7946345 ~ 7955192 (-) True G467578
TU538097 other upstream 47592 10316130 ~ 10316685 (-) True G468823

Expression Profile