RNA id: TU537987


Basic Information

Item Value
RNA id TU537987
length 1383
lncRNA type antisense_over
GC content 0.34
exon number 4
gene id G468718
representative True

Chromosome Information

Item Value
chromosome id CI01000325
NCBI id null
chromosome length 10587162
location 10386043 ~ 10388152 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCAATTTTATTTCAGATTTTAAAGCTGTATTGATGAGTATCGAATGTGTTAGAAACAAAGAGGCACAAAGACATGAAGAACACACATCACATAATAACAAAAATAAAAGCTGACATCTCCACCTTCAGCCAAACCACAGATTTGGGAATAGAAAAAAAAAAAAAAAAAAAAAAAGGTTACATCACATTATGGTATTTTCCTGAACTGTCTTTTCTTGTCATTTCCGTATTACAAAATACAAAAGCACAACCATCCCAACACACTTTACTCATTCAATATTGACTACACTTTAGCCAATATGATTTCACTGTAACTCACAACCAATGCATCAGCCCCTTTGGTTAACATGATCATTGTTATTAATTTGAAAACAAAATGGCAAATAATTTTTTTTCATGAATTTTCGTAAGGCTGCTTGGTTTTTTTTATTCATTTGTGCTTCTGTCGACAGTATAGGCAATTTGTTTAGAATAAAGGTCTGCTTTCTTTACATTGCAGTAACTTGAAGGGAATGATTATGTAAATACACCCAAGTATTAACATCAAGTCCTTAAATAAATGTAAACATATACATCTTTTGAGGTCAGAATATTGACCCACTTCACTTAAAATCATTACTGGAGCATCGTTCTGATATTTTTTGGAGTGGACTCATCATTCAGGTGTTTTGTGGTGAACTTGAGGGCATTAAGGAGACCTTCAACATTATCTGCTGGCTGATCTTTTAAGACTTTAATGCATCCTTTCATATCAATTTTTGAGGATTTGTTGAAGGCACCGTTAGGATGTACATGGTCATAGAGGATAATAACCCCCACCATCACCCTCATACAAAACAGAAGTGTATCTTCACTGTTGAATCGACTCGTGTATTCTGGTGTCTCCAGCATGACCTTGCAAACACTTGCCATAGTGCTCAGGCAGTCTGTGGTGTTCTCAAGAGGTAATGTCTTATTCTATAGAGAAAAGAATTAAAGGAGTAATTCACACAAACATTTCAATGCATGTATATTGATTATTATACACTACGACCATTCAAAAGTTTGGGATTGGTAAGATTTTTTTTAATGTTTTTGAAAGAAGTCTCTTATGCTCATCATGGCTGCATTTATTTGACCAAATGATTTATTTATTTGATCATATTTTCAAATGATCCATCAGAAATCATTCTAATATGGTGCATAAGGGACATTTGTTATTATCAATGTTGAAAACAGTTGTCCTGCTTAAAGTCCCCCTGTGGTGAAAATCGAGTTTTTAAATGTTGTTTATATGTCTATGTGGTGTTTTTAATATGCTTGAAGACAAACCATGTGCAAATTCATGTCAACACCATTGCTGAGTATTTTCTTCTTAAAACTGCAGTGACAAAAAGACAGTCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU538103 lncRNA downstream 30008 10353364 ~ 10356035 (-) True G468829
TU538102 lncRNA downstream 33747 10351998 ~ 10352296 (-) True G468828
TU537977 lncRNA downstream 78194 10306459 ~ 10307849 (-) True G468711
TU537976 lncRNA downstream 83310 10292050 ~ 10302733 (-) True G468710
TU537968 lncRNA downstream 117505 10257268 ~ 10268538 (-) True G468705
TU538138 lncRNA upstream 26983 10415135 ~ 10437849 (-) True G468861
TU538156 lncRNA upstream 47116 10435268 ~ 10469485 (-) False G468876
TU538158 lncRNA upstream 49872 10438024 ~ 10469485 (-) True G468876
TU538168 lncRNA upstream 72434 10460586 ~ 10463677 (-) True G468885
TU538126 lncRNA upstream 84581 10472733 ~ 10473902 (-) True G468850
CI01000325_10330659_10345549.mRNA mRNA downstream 40494 10330659 ~ 10345549 (-) True CI01000325_10330659_10345549
CI01000325_10259809_10261986.mRNA mRNA downstream 124057 10259473 ~ 10261986 (-) True CI01000325_10259809_10261986
CI01000325_10223671_10247196.mRNA mRNA downstream 138511 10222845 ~ 10247532 (-) True CI01000325_10223671_10247196
CI01000325_10200118_10220665.mRNA mRNA downstream 164792 10199979 ~ 10221251 (-) True CI01000325_10200118_10220665
CI01000325_10092490_10094515.mRNA mRNA downstream 291528 10092414 ~ 10094515 (-) True CI01000325_10092490_10094515
CI01000325_10486953_10491074.mRNA mRNA upstream 98124 10486276 ~ 10491074 (-) True CI01000325_10486953_10491074
TU538097 other downstream 69358 10316130 ~ 10316685 (-) True G468823
TU537962 other downstream 193701 10167099 ~ 10192342 (-) True G468702
TU537690 other downstream 1098719 9287209 ~ 9287324 (-) True G468455
TU536859 other downstream 1688460 8679172 ~ 8697583 (-) True G467741
TU536851 other downstream 1814565 8564630 ~ 8568433 (-) True G467737

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00034757 False 1668 mRNA 0.39 11 NC_007131.7 35282682 ~ 35298020 (+)
bowfin (Amia calva) TU7999 True 2996 lncRNA 0.46 2 CM030121.1 37844509 ~ 37847720 (+)